Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_000500.1 Data

Correlation between Smp_000500.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_000500.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_000500.1 0 -1.37 -5.63 -0.86 4.61

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000500.1 SmLINC00001-IBu 0.85 5.37e-05 8.00e-04
Smp_000500.1 SmLINC00004-IBu 0.81 1.00e-04 2.20e-03
Smp_000500.1 SmLINC00007-IBu 0.87 2.32e-05 4.00e-04
Smp_000500.1 SmLINC01520-IBu 0.92 6.58e-07 3.81e-05
Smp_000500.1 SmLINC02029-IBu 0.93 4.16e-07 2.76e-05
Smp_000500.1 SmLINC02376-IBu 0.84 6.32e-05 1.00e-03
Smp_000500.1 SmLINC02539-IBu 0.89 7.59e-06 2.00e-04
Smp_000500.1 SmLINC02540-IBu 0.86 3.69e-05 6.00e-04
Smp_000500.1 SmLINC02577-IBu 0.92 5.31e-07 3.28e-05
Smp_000500.1 SmLINC02776-IBu 0.87 2.07e-05 4.00e-04
Smp_000500.1 SmLINC02783-IBu 0.96 6.39e-09 1.58e-06
Smp_000500.1 SmLINC02786-IBu 0.96 3.57e-09 1.08e-06
Smp_000500.1 SmLINC03326-IBu 0.87 2.45e-05 5.00e-04
Smp_000500.1 SmLINC03658-IBu 0.88 9.18e-06 2.00e-04
Smp_000500.1 SmLINC04235-IBu 0.93 3.02e-07 2.21e-05
Smp_000500.1 SmLINC04237-IBu 0.93 2.73e-07 2.06e-05
Smp_000500.1 SmLINC04627-IBu 0.96 1.04e-08 2.20e-06
Smp_000500.1 SmLINC04896-IBu 0.83 1.00e-04 1.60e-03
Smp_000500.1 SmLINC05404-IBu 0.92 1.12e-06 5.57e-05
Smp_000500.1 SmLINC05684-IBu 0.97 1.00e-09 4.74e-07
Smp_000500.1 SmLINC06239-IBu 0.91 2.11e-06 8.74e-05

Correlation between Smp_000500.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000500.1 0 -1.37 -5.63 -0.86 4.61
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_000500.1 0.92 8.02e-07 4.57e-05
Smp_000500.1 Smp_004420.3 0.97 3.68e-10 2.69e-07
Smp_000500.1 Smp_007950.1 0.91 1.65e-06 7.61e-05
Smp_000500.1 Smp_016490.2 0.92 5.86e-07 3.67e-05
Smp_000500.1 Smp_028870.1 0.91 1.83e-06 8.17e-05
Smp_000500.1 Smp_037720.1 0.90 3.52e-06 1.00e-04
Smp_000500.1 Smp_041540.1 0.96 4.56e-09 1.36e-06
Smp_000500.1 Smp_070540.1 0.96 1.18e-08 2.55e-06
Smp_000500.1 Smp_085180.1 0.92 6.81e-07 4.07e-05
Smp_000500.1 Smp_086450.3 0.90 4.34e-06 1.00e-04
Smp_000500.1 Smp_102780.1 0.92 9.25e-07 5.05e-05
Smp_000500.1 Smp_105450.1 0.98 1.97e-11 4.20e-08
Smp_000500.1 Smp_105450.2 0.98 5.01e-12 1.80e-08
Smp_000500.1 Smp_123880.1 0.91 1.20e-06 6.06e-05
Smp_126340.1 Smp_000500.1 0.97 1.77e-09 7.34e-07
Smp_000500.1 Smp_130100.1 0.93 2.11e-07 1.81e-05
Smp_000500.1 Smp_130970.1 0.92 8.57e-07 4.78e-05
Smp_000500.1 Smp_131410.1 0.92 8.49e-07 4.75e-05
Smp_000500.1 Smp_136730.1 0.97 1.07e-09 5.33e-07
Smp_000500.1 Smp_137460.1 0.97 7.57e-10 4.26e-07
Smp_000500.1 Smp_137700.1 0.98 4.21e-12 1.61e-08
Smp_000500.1 Smp_137720.1 0.94 1.28e-07 1.28e-05
Smp_000500.1 Smp_138360.1 0.98 2.34e-11 4.68e-08
Smp_000500.1 Smp_139160.1 0.97 2.67e-10 2.18e-07
Smp_000500.1 Smp_139240.1 0.95 4.43e-08 6.22e-06
Smp_152150.1 Smp_000500.1 0.94 6.73e-08 8.26e-06
Smp_000500.1 Smp_159650.1 0.91 1.42e-06 6.84e-05
Smp_000500.1 Smp_162320.1 0.95 3.37e-08 5.17e-06
Smp_000500.1 Smp_163700.1 0.91 2.21e-06 9.35e-05
Smp_000500.1 Smp_164320.1 0.92 8.97e-07 4.94e-05
Smp_000500.1 Smp_164400.1 0.97 9.15e-10 4.81e-07
Smp_181070.1 Smp_000500.1 0.97 3.08e-10 2.40e-07
Smp_000500.1 Smp_187140.1 0.95 4.71e-08 6.48e-06
Smp_000500.1 Smp_194380.1 0.92 7.05e-07 4.17e-05
Smp_000500.1 Smp_194910.1 0.96 3.84e-09 1.21e-06
Smp_000500.1 Smp_203030.1 0.91 1.97e-06 8.63e-05
Smp_000500.1 Smp_205580.1 0.95 2.82e-08 4.58e-06