Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_000420.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_000420.1 0 0.46 -1.29 3.81 10.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000420.1 SmLINC04235-IBu 0.82 1.00e-04 2.10e-03
Smp_000420.1 SmLINC04627-IBu 0.80 2.00e-04 3.00e-03
Smp_000420.1 SmLINC06239-IBu 0.89 5.54e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
Smp_000280.1 0 0.28 -3.85 1.78 7.49
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000400.1 0 0.00 0.00 3.32 8.57
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000430.1 0 2.49 3.10 2.37 9.46
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_020540.1 0 -4.72 0.81 -4.72 4.67
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_041880.1 0 4.35 0.78 4.43 8.11
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_050750.1 0 0.03 1.31 3.80 9.53
Smp_054010.1 0 0.77 2.59 2.00 4.82
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_095980.1 0 2.98 -3.66 0.39 7.55
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_131110.5 0 -4.13 -2.00 1.07 7.44
Smp_137360.1 0 0.00 2.23 6.21 9.69
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_151160.1 0 1.51 0.84 -0.56 5.60
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_172010.1 0 1.31 -0.84 1.05 5.07
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_199580.1 0 0.00 3.75 4.57 6.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000420.1 SmLINC03370-IBu 0.98 3.47e-12 1.43e-08
Smp_000420.1 SmLINC04669-IBu 0.98 8.39e-11 1.04e-07
Smp_000280.1 Smp_000420.1 0.99 1.01e-14 4.02e-10
Smp_000390.1 Smp_000420.1 0.95 2.03e-08 3.68e-06
Smp_000400.1 Smp_000420.1 0.97 1.15e-09 5.60e-07
Smp_000420.1 Smp_000410.1 0.99 1.16e-13 1.76e-09
Smp_000430.1 Smp_000420.1 0.99 1.03e-13 1.65e-09
Smp_011270.1 Smp_000420.1 0.91 2.18e-06 9.25e-05
Smp_000420.1 Smp_013540.1 0.99 2.40e-18 1.14e-12
Smp_014610.1 Smp_000420.1 0.99 3.38e-16 4.20e-11
Smp_020540.1 Smp_000420.1 0.94 1.74e-07 1.58e-05
Smp_000420.1 Smp_033250.1 0.99 4.25e-17 9.92e-12
Smp_000420.1 Smp_041880.1 0.94 1.78e-07 1.61e-05
Smp_050270.1 Smp_000420.1 0.99 3.17e-19 2.13e-13
Smp_050750.1 Smp_000420.1 0.98 5.69e-11 8.17e-08
Smp_054010.1 Smp_000420.1 0.93 3.05e-07 2.33e-05
Smp_056700.1 Smp_000420.1 0.96 5.05e-09 1.45e-06
Smp_000420.1 Smp_058160.1 0.98 2.91e-11 5.39e-08
Smp_000420.1 Smp_076320.1 0.93 2.09e-07 1.79e-05
Smp_077900.1 Smp_000420.1 0.99 1.83e-13 2.34e-09
Smp_077920.1 Smp_000420.1 0.99 3.92e-14 9.17e-10
Smp_000420.1 Smp_095350.1 0.93 2.43e-07 1.99e-05
Smp_000420.1 Smp_095980.1 0.98 1.28e-10 1.36e-07
Smp_112450.1 Smp_000420.1 0.93 2.96e-07 2.28e-05
Smp_121070.1 Smp_000420.1 0.95 5.49e-08 7.20e-06
Smp_122280.1 Smp_000420.1 0.91 1.44e-06 6.91e-05
Smp_000420.1 Smp_130970.1 0.92 6.86e-07 4.09e-05
Smp_000420.1 Smp_131110.2 0.99 1.66e-12 9.04e-09
Smp_131110.5 Smp_000420.1 0.98 1.04e-10 1.20e-07
Smp_000420.1 Smp_137360.1 0.97 1.13e-09 5.52e-07
Smp_000420.1 Smp_138570.1 0.99 8.19e-18 2.92e-12
Smp_144440.1 Smp_000420.1 0.97 2.13e-10 1.89e-07
Smp_146480.1 Smp_000420.1 0.98 6.61e-12 2.13e-08
Smp_000420.1 Smp_151160.1 0.97 8.48e-10 4.58e-07
Smp_000420.1 Smp_155310.1 0.99 4.55e-18 1.78e-12
Smp_155310.2 Smp_000420.1 0.98 6.63e-11 9.00e-08
Smp_165360.1 Smp_000420.1 0.99 4.03e-19 2.60e-13
Smp_172010.1 Smp_000420.1 0.99 5.92e-14 1.19e-09
Smp_175560.1 Smp_000420.1 0.99 3.31e-14 8.24e-10
Smp_191910.1 Smp_000420.1 0.99 1.08e-16 1.86e-11
Smp_199580.1 Smp_000420.1 0.93 3.76e-07 2.69e-05