Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_000400.1 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000400.1 0 0.00 0.00 3.32 8.57
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000400.1 Smp_000410.1 0.98 5.31e-12 1.86e-08
Smp_000400.1 Smp_000420.1 0.97 1.15e-09 5.60e-07
Smp_011270.1 Smp_000400.1 0.97 1.79e-10 1.69e-07
Smp_000400.1 Smp_033250.1 0.98 6.02e-11 8.47e-08
Smp_000400.1 Smp_058160.1 0.98 1.16e-11 3.00e-08
Smp_077920.1 Smp_000400.1 0.97 1.15e-09 5.58e-07
Smp_000400.1 Smp_131110.2 0.94 1.87e-07 1.66e-05
Smp_144440.1 Smp_000400.1 0.92 7.03e-07 4.16e-05
Smp_000400.1 Smp_155310.1 0.97 1.89e-10 1.75e-07
Smp_155310.2 Smp_000400.1 0.99 5.64e-17 1.18e-11
Smp_175560.1 Smp_000400.1 0.95 2.93e-08 4.70e-06
Smp_000400.1 Smp_191910.1 0.97 1.01e-09 5.13e-07