Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_000390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_000390.1 0 1.88 0.00 5.14 11.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC00001-IBu 0.81 2.00e-04 2.50e-03
Smp_000390.1 SmLINC02029-IBu 0.82 1.00e-04 2.10e-03
Smp_000390.1 SmLINC02376-IBu 0.85 4.32e-05 7.00e-04
Smp_000390.1 SmLINC02577-IBu 0.81 2.00e-04 2.70e-03
Smp_000390.1 SmLINC02783-IBu 0.86 3.30e-05 6.00e-04
Smp_000390.1 SmLINC02786-IBu 0.81 1.00e-04 2.20e-03
Smp_000390.1 SmLINC03326-IBu 0.80 2.00e-04 2.90e-03
Smp_000390.1 SmLINC04235-IBu 0.92 7.99e-07 4.37e-05
Smp_000390.1 SmLINC04627-IBu 0.91 1.40e-06 6.54e-05
Smp_000390.1 SmLINC05404-IBu 0.84 8.00e-05 1.20e-03
Smp_000390.1 SmLINC05684-IBu 0.87 2.30e-05 4.00e-04
Smp_000390.1 SmLINC06239-IBu 0.96 7.22e-09 1.72e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00186-IBu 0 -0.08 1.30 4.43 6.88
SmLINC01330-IBu 0 1.65 1.89 5.35 8.80
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
SmLINC04710-IBu 0 -0.76 -0.04 -2.76 4.43
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
SmLINC06800-IBu 0 -3.84 -1.17 -0.07 3.49
Smp_000190.1 0 0.99 1.82 3.64 5.94
Smp_000270.1 0 -3.32 -1.95 -0.32 6.22
Smp_000280.1 0 0.28 -3.85 1.78 7.49
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000430.1 0 2.49 3.10 2.37 9.46
Smp_000500.1 0 -1.37 -5.63 -0.86 4.61
Smp_002600.1 0 0.21 -0.30 3.90 5.91
Smp_004420.1 0 0.50 1.59 6.61 9.77
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_008610.1 0 0.90 0.48 3.97 5.94
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_020540.1 0 -4.72 0.81 -4.72 4.67
Smp_026400.1 0 0.88 0.91 0.27 4.54
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_041880.1 0 4.35 0.78 4.43 8.11
Smp_043390.1 0 0.68 0.51 4.04 6.00
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_050750.1 0 0.03 1.31 3.80 9.53
Smp_054010.1 0 0.77 2.59 2.00 4.82
Smp_055260.1 0 -1.90 -1.11 0.06 5.74
Smp_055740.1 0 -1.21 -3.82 3.49 7.06
Smp_056350.1 0 0.33 1.23 3.20 6.26
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_063520.1 0 3.75 2.97 5.08 8.02
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_078720.1 0 1.88 0.00 3.32 8.87
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_102020.1 0 -0.28 -4.43 0.53 6.11
Smp_105420.1 0 1.81 1.45 7.11 9.80
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_121930.1 0 1.51 3.52 6.68 9.02
Smp_121930.2 0 1.74 1.71 6.11 8.12
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_128160.1 0 0.17 1.21 1.97 4.65
Smp_129410.1 0 0.18 1.93 1.84 4.77
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_131500.1 0 1.11 1.77 4.12 6.64
Smp_137360.1 0 0.00 2.23 6.21 9.69
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_141160.1 0 0.62 1.59 2.79 5.35
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_145490.1 0 3.57 3.53 3.37 9.86
Smp_146180.1 0 0.60 -1.14 0.53 4.12
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_146810.1 0 0.41 0.21 2.10 6.19
Smp_151160.1 0 1.51 0.84 -0.56 5.60
Smp_153070.1 0 -1.48 -3.15 4.90 8.45
Smp_153360.1 0 -2.73 -2.73 4.39 6.61
Smp_154390.1 0 1.91 0.76 3.80 7.69
Smp_154590.1 0 1.49 -3.83 3.03 7.38
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_164040.1 0 0.77 2.16 4.05 6.32
Smp_164140.1 0 1.44 1.54 1.73 5.01
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_172010.1 0 1.31 -0.84 1.05 5.07
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_179170.1 0 1.52 0.09 6.08 8.60
Smp_179600.1 0 -1.93 -1.93 -1.93 5.34
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187030.1 0 -1.05 0.53 2.40 4.29
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_194840.1 0 1.29 1.90 5.62 8.30
Smp_200110.1 0 1.46 2.99 3.53 6.65
Smp_201330.1 0 1.13 0.91 1.95 4.84
Smp_202830.1 0 0.98 -0.31 1.06 6.94
Smp_209060.1 0 0.56 0.29 3.49 5.62
Smp_213420.1 0 0.19 1.45 1.85 4.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC00186-IBu 0.91 1.41e-06 6.82e-05
Smp_000390.1 SmLINC01330-IBu 0.90 3.11e-06 1.00e-04
Smp_000390.1 SmLINC03370-IBu 0.97 2.23e-09 8.55e-07
Smp_000390.1 SmLINC04235-IBu 0.92 7.99e-07 4.55e-05
Smp_000390.1 SmLINC04627-IBu 0.91 1.40e-06 6.78e-05
Smp_000390.1 SmLINC04669-IBu 0.93 2.35e-07 1.94e-05
Smp_000390.1 SmLINC04710-IBu 0.94 1.19e-07 1.21e-05
Smp_000390.1 SmLINC06239-IBu 0.96 7.22e-09 1.84e-06
Smp_000390.1 SmLINC06797-IBu 0.93 1.98e-07 1.73e-05
Smp_000390.1 SmLINC06800-IBu 0.93 3.86e-07 2.74e-05
Smp_000390.1 Smp_000190.1 0.93 3.24e-07 2.43e-05
Smp_000390.1 Smp_000270.1 0.98 1.53e-11 3.58e-08
Smp_000390.1 Smp_000280.1 0.93 2.60e-07 2.09e-05
Smp_000390.1 Smp_000410.1 0.94 1.66e-07 1.53e-05
Smp_000390.1 Smp_000420.1 0.95 2.03e-08 3.68e-06
Smp_000430.1 Smp_000390.1 0.93 3.32e-07 2.47e-05
Smp_000390.1 Smp_000500.1 0.92 8.02e-07 4.57e-05
Smp_000390.1 Smp_002600.1 0.90 3.82e-06 1.00e-04
Smp_000390.1 Smp_004420.1 0.90 3.05e-06 1.00e-04
Smp_000390.1 Smp_004420.3 0.95 2.93e-08 4.71e-06
Smp_000390.1 Smp_008610.1 0.90 3.43e-06 1.00e-04
Smp_000390.1 Smp_013540.1 0.96 5.45e-09 1.53e-06
Smp_000390.1 Smp_014610.1 0.93 2.24e-07 1.88e-05
Smp_000390.1 Smp_020540.1 0.94 1.06e-07 1.13e-05
Smp_000390.1 Smp_026400.1 0.95 2.69e-08 4.44e-06
Smp_000390.1 Smp_033250.1 0.94 6.37e-08 7.96e-06
Smp_000390.1 Smp_041880.1 0.98 4.01e-11 6.55e-08
Smp_000390.1 Smp_043390.1 0.90 4.69e-06 1.00e-04
Smp_000390.1 Smp_050270.1 0.96 8.46e-09 2.04e-06
Smp_050750.1 Smp_000390.1 0.90 4.35e-06 1.00e-04
Smp_000390.1 Smp_054010.1 0.91 2.16e-06 9.21e-05
Smp_000390.1 Smp_055260.1 0.97 4.06e-10 2.86e-07
Smp_000390.1 Smp_055740.1 0.94 1.72e-07 1.57e-05
Smp_000390.1 Smp_056350.1 0.90 4.31e-06 1.00e-04
Smp_000390.1 Smp_056700.1 0.99 2.29e-14 6.57e-10
Smp_000390.1 Smp_058160.1 0.90 2.60e-06 1.00e-04
Smp_000390.1 Smp_063520.1 0.90 2.54e-06 1.00e-04
Smp_000390.1 Smp_070360.1 0.97 1.05e-09 5.25e-07
Smp_000390.1 Smp_076320.1 0.98 1.33e-11 3.29e-08
Smp_000390.1 Smp_077890.1 0.98 1.40e-11 3.40e-08
Smp_000390.1 Smp_077900.1 0.96 6.77e-09 1.76e-06
Smp_000390.1 Smp_077920.1 0.96 6.50e-09 1.71e-06
Smp_000390.1 Smp_078720.1 0.90 2.74e-06 1.00e-04
Smp_000390.1 Smp_095350.1 0.99 1.13e-12 7.14e-09
Smp_000390.1 Smp_102020.1 0.97 2.98e-10 2.34e-07
Smp_000390.1 Smp_105420.1 0.91 2.23e-06 9.40e-05
Smp_000390.1 Smp_112450.1 0.99 1.96e-15 1.41e-10
Smp_000390.1 Smp_121070.1 0.98 3.97e-12 1.55e-08
Smp_000390.1 Smp_121930.1 0.93 3.50e-07 2.57e-05
Smp_000390.1 Smp_121930.2 0.91 1.50e-06 7.12e-05
Smp_000390.1 Smp_122280.1 0.95 2.47e-08 4.19e-06
Smp_000390.1 Smp_128160.1 0.96 8.46e-09 2.04e-06
Smp_000390.1 Smp_129410.1 0.91 2.08e-06 8.96e-05
Smp_000390.1 Smp_130970.1 0.98 2.33e-11 4.67e-08
Smp_000390.1 Smp_131110.2 0.95 3.70e-08 5.50e-06
Smp_000390.1 Smp_131500.1 0.93 3.02e-07 2.32e-05
Smp_000390.1 Smp_137360.1 0.97 2.56e-10 2.12e-07
Smp_000390.1 Smp_137460.1 0.93 2.09e-07 1.80e-05
Smp_000390.1 Smp_137700.1 0.95 3.55e-08 5.36e-06
Smp_000390.1 Smp_138360.1 0.97 1.74e-09 7.26e-07
Smp_000390.1 Smp_138570.1 0.95 3.70e-08 5.50e-06
Smp_000390.1 Smp_139160.1 0.90 2.90e-06 1.00e-04
Smp_000390.1 Smp_141160.1 0.93 2.11e-07 1.80e-05
Smp_000390.1 Smp_144440.1 0.99 1.94e-13 2.41e-09
Smp_000390.1 Smp_145490.1 0.92 7.67e-07 4.43e-05
Smp_000390.1 Smp_146180.1 0.94 7.22e-08 8.67e-06
Smp_000390.1 Smp_146480.1 0.96 4.17e-09 1.28e-06
Smp_000390.1 Smp_146810.1 0.91 1.28e-06 6.36e-05
Smp_000390.1 Smp_151160.1 0.97 1.75e-09 7.30e-07
Smp_000390.1 Smp_153070.1 0.95 2.46e-08 4.18e-06
Smp_000390.1 Smp_153360.1 0.90 3.32e-06 1.00e-04
Smp_000390.1 Smp_154390.1 0.91 1.92e-06 8.46e-05
Smp_000390.1 Smp_154590.1 0.94 6.54e-08 8.10e-06
Smp_000390.1 Smp_155310.1 0.95 2.96e-08 4.74e-06
Smp_000390.1 Smp_155310.2 0.90 3.62e-06 1.00e-04
Smp_000390.1 Smp_159650.1 0.91 2.28e-06 9.54e-05
Smp_000390.1 Smp_164040.1 0.91 1.72e-06 7.85e-05
Smp_000390.1 Smp_164140.1 0.90 2.55e-06 1.00e-04
Smp_000390.1 Smp_165360.1 0.96 5.28e-09 1.49e-06
Smp_000390.1 Smp_172010.1 0.93 3.24e-07 2.43e-05
Smp_000390.1 Smp_175560.1 0.97 2.48e-10 2.08e-07
Smp_000390.1 Smp_179170.1 0.95 5.57e-08 7.27e-06
Smp_000390.1 Smp_179600.1 0.90 2.64e-06 1.00e-04
Smp_000390.1 Smp_181070.1 0.90 3.45e-06 1.00e-04
Smp_000390.1 Smp_187030.1 0.90 4.44e-06 1.00e-04
Smp_000390.1 Smp_191910.1 0.96 6.70e-09 1.75e-06
Smp_000390.1 Smp_194840.1 0.95 3.20e-08 5.00e-06
Smp_000390.1 Smp_200110.1 0.92 7.14e-07 4.21e-05
Smp_000390.1 Smp_201330.1 0.96 2.99e-09 1.03e-06
Smp_000390.1 Smp_202830.1 0.95 1.60e-08 3.13e-06
Smp_000390.1 Smp_209060.1 0.90 3.30e-06 1.00e-04
Smp_000390.1 Smp_213420.1 0.92 8.11e-07 4.60e-05