Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_000350.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_000350.2 0 0.22 2.78 3.99 4.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000350.2 SmLINC00171-IBu 0.83 1.00e-04 1.40e-03
Smp_000350.2 SmLINC00266-IBu 0.93 4.81e-07 3.06e-05
Smp_000350.2 SmLINC00369-IBu 0.81 2.00e-04 2.60e-03
Smp_000350.2 SmLINC00548-IBu 0.81 2.00e-04 2.30e-03
Smp_000350.2 SmLINC01066-IBu 0.83 9.68e-05 1.30e-03
Smp_000350.2 SmLINC01431-IBu 0.82 1.00e-04 1.80e-03
Smp_000350.2 SmLINC01435-IBu 0.82 1.00e-04 2.00e-03
Smp_000350.2 SmLINC01746-IBu 0.80 3.00e-04 3.20e-03
Smp_000350.2 SmLINC02084-IBu 0.89 7.01e-06 2.00e-04
Smp_000350.2 SmLINC02255-IBu -0.80 3.00e-04 3.30e-03
Smp_000350.2 SmLINC02545-IBu 0.80 3.00e-04 3.40e-03
Smp_000350.2 SmLINC02546-IBu 0.85 5.26e-05 8.00e-04
Smp_000350.2 SmLINC02657-IBu -0.80 2.00e-04 3.10e-03
Smp_000350.2 SmLINC03108-IBu 0.86 2.55e-05 5.00e-04
Smp_000350.2 SmLINC03693-IBu 0.83 1.00e-04 1.40e-03
Smp_000350.2 SmLINC03927-IBu 0.88 1.14e-05 2.00e-04
Smp_000350.2 SmLINC04475-IBu 0.84 8.14e-05 1.20e-03
Smp_000350.2 SmLINC04684-IBu 0.84 6.69e-05 1.00e-03
Smp_000350.2 SmLINC05258-IBu 0.84 7.33e-05 1.10e-03
Smp_000350.2 SmLINC06221-IBu 0.84 8.24e-05 1.20e-03
Smp_000350.2 SmLINC06418-IBu 0.80 2.00e-04 2.80e-03
Smp_000350.2 SmLINC06535-IBu -0.80 2.00e-04 3.00e-03
Smp_000350.2 SmLINC06543-IBu 0.85 4.26e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000350.2 0 0.22 2.78 3.99 4.34
Smp_172510.2 0 9.12 10.77 11.45 12.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000350.2 Smp_172510.2 0.9 3.61e-06 1.00e-04