Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_000330.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000330.1 SmLINC04957-IBu 0.93 2.30e-07 1.82e-05
Smp_000330.1 SmLINC06890-IBu 0.92 1.17e-06 5.75e-05
Smp_000330.1 SmLINC06903-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000330.1 Smp_007270.2 0.90 2.88e-06 1.00e-04
Smp_032980.1 Smp_000330.1 0.94 1.71e-07 1.56e-05
Smp_043670.2 Smp_000330.1 0.92 7.16e-07 4.22e-05
Smp_000330.1 Smp_186130.1 0.90 2.97e-06 1.00e-04