Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC07026-IBu Data

Chromosome: SC 2381 - Coordinate: SC 2381:80-2646 - Strand: +


Fig. S5 for SmLINC07026-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC07026-IBu 0 4.78 5.52 8.98 8.96
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC07026-IBu 0.90 3.17e-06 1.00e-04
Smp_045200.1 SmLINC07026-IBu 0.92 9.89e-07 5.29e-05
Smp_051210.3 SmLINC07026-IBu 0.91 1.94e-06 8.53e-05
Smp_055340.2 SmLINC07026-IBu 0.91 2.18e-06 9.25e-05
Smp_056460.1 SmLINC07026-IBu 0.90 3.78e-06 1.00e-04
Smp_058660.1 SmLINC07026-IBu 0.95 3.26e-08 5.06e-06
Smp_081920.1 SmLINC07026-IBu 0.90 4.38e-06 1.00e-04
Smp_082580.1 SmLINC07026-IBu 0.92 9.09e-07 4.98e-05
Smp_083990.2 SmLINC07026-IBu 0.90 2.60e-06 1.00e-04
Smp_123550.1 SmLINC07026-IBu 0.93 2.04e-07 1.76e-05
Smp_137320.1 SmLINC07026-IBu 0.95 3.56e-08 5.37e-06
Smp_141680.1 SmLINC07026-IBu 0.95 1.77e-08 3.34e-06
Smp_145400.1 SmLINC07026-IBu 0.96 7.11e-09 1.82e-06
Smp_150980.2 SmLINC07026-IBu 0.90 4.15e-06 1.00e-04
Smp_151120.1 SmLINC07026-IBu 0.96 3.89e-09 1.22e-06
Smp_166860.1 SmLINC07026-IBu 0.90 2.75e-06 1.00e-04
Smp_170280.1 SmLINC07026-IBu 0.92 9.87e-07 5.28e-05
Smp_172480.1 SmLINC07026-IBu 0.93 3.90e-07 2.76e-05
Smp_172960.1 SmLINC07026-IBu 0.94 1.07e-07 1.13e-05
Smp_194860.1 SmLINC07026-IBu 0.93 2.27e-07 1.90e-05
Smp_203090.1 SmLINC07026-IBu 0.90 2.73e-06 1.00e-04
Smp_205270.1 SmLINC07026-IBu 0.94 1.07e-07 1.14e-05