Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC07019-IBu Data

Chromosome: SC 2210 - Coordinate: SC 2210:907-2968 - Strand: -


Fig. S5 for SmLINC07019-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_042590.2 0 -1.65 -1.31 -11.45 -8.14
SmLINC07019-IBu 0 -0.56 -0.21 -4.43 -4.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042590.2 SmLINC07019-IBu 0.94 6.86e-08 8.37e-06
Smp_098890.1 SmLINC07019-IBu 0.92 8.29e-07 4.67e-05
Smp_113660.1 SmLINC07019-IBu 0.90 3.49e-06 1.00e-04
Smp_194060.1 SmLINC07019-IBu 0.95 3.19e-08 4.99e-06