Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC07016-IBu Data

Chromosome: SC 2210 - Coordinate: SC 2210:0-3219 - Strand: -


Fig. S5 for SmLINC07016-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC07016-IBu 0.90 3.29e-06 1.00e-04
Smp_090930.5 SmLINC07016-IBu 0.92 1.18e-06 5.99e-05
Smp_098890.1 SmLINC07016-IBu 0.95 1.96e-08 3.59e-06
Smp_159070.3 SmLINC07016-IBu 0.90 4.29e-06 1.00e-04
Smp_168800.1 SmLINC07016-IBu 0.92 1.13e-06 5.83e-05
Smp_194060.1 SmLINC07016-IBu 0.95 4.46e-08 6.25e-06
Smp_200120.1 SmLINC07016-IBu 0.97 1.18e-09 5.67e-07
Smp_205060.1 SmLINC07016-IBu 0.92 9.11e-07 4.99e-05