Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC07014-IBu Data

Chromosome: SC 2210 - Coordinate: SC 2210:0-3218 - Strand: -


Fig. S5 for SmLINC07014-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
SmLINC07014-IBu 0 0.31 0.27 -11.64 -11.64
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_103540.1 0 11.43 12.63 8.84 9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC07014-IBu 0.91 2.38e-06 9.86e-05
Smp_059340.3 SmLINC07014-IBu 0.97 5.65e-10 3.53e-07
Smp_059530.1 SmLINC07014-IBu 0.92 8.66e-07 4.82e-05
Smp_062610.2 SmLINC07014-IBu 0.91 1.71e-06 7.82e-05
Smp_083380.2 SmLINC07014-IBu 0.90 4.51e-06 1.00e-04
Smp_103540.1 SmLINC07014-IBu 0.90 3.95e-06 1.00e-04
Smp_168800.1 SmLINC07014-IBu 0.94 1.59e-07 1.48e-05