Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC07012-IBu Data

Chromosome: SC 2210 - Coordinate: SC 2210:0-3000 - Strand: -


Fig. S5 for SmLINC07012-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC07012-IBu 0.96 4.13e-09 1.27e-06
Smp_021340.3 SmLINC07012-IBu 0.96 6.93e-09 1.79e-06
Smp_033950.3 SmLINC07012-IBu 0.93 2.54e-07 2.05e-05
Smp_040970.3 SmLINC07012-IBu 0.96 1.18e-08 2.55e-06
Smp_059340.3 SmLINC07012-IBu 0.92 1.07e-06 5.62e-05
Smp_062610.2 SmLINC07012-IBu 0.94 1.83e-07 1.63e-05
Smp_083380.2 SmLINC07012-IBu 0.90 2.84e-06 1.00e-04
Smp_098370.1 SmLINC07012-IBu 0.94 1.91e-07 1.68e-05
Smp_099160.4 SmLINC07012-IBu 0.97 1.47e-09 6.53e-07