Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC07001-IBu Data

Chromosome: SC 1704 - Coordinate: SC 1704:2161-4142 - Strand: -


Fig. S5 for SmLINC07001-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
SmLINC07001-IBu 0 -1.21 -2.11 -6.65 -6.97
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_055340.2 0 8.73 10.47 12.13 12.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 SmLINC07001-IBu 0.95 3.38e-08 5.19e-06
Smp_055340.2 SmLINC07001-IBu -0.92 1.15e-06 5.88e-05
Smp_149670.1 SmLINC07001-IBu 0.91 1.93e-06 8.48e-05
Smp_157140.1 SmLINC07001-IBu -0.90 4.00e-06 1.00e-04