Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06986-IBu Data

Chromosome: SC 1274 - Coordinate: SC 1274:28-3513 - Strand: -


Fig. S5 for SmLINC06986-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC06986-IBu 0 -1.62 -1.16 2.92 3.16
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC06986-IBu 0.92 6.56e-07 3.97e-05
Smp_031040.1 SmLINC06986-IBu 0.92 6.72e-07 4.04e-05
Smp_031770.10 SmLINC06986-IBu 0.92 1.11e-06 5.77e-05
Smp_033260.1 SmLINC06986-IBu 0.91 1.39e-06 6.75e-05
Smp_034980.2 SmLINC06986-IBu 0.92 6.01e-07 3.73e-05
Smp_038870.2 SmLINC06986-IBu 0.93 4.72e-07 3.16e-05
Smp_040970.2 SmLINC06986-IBu 0.93 2.08e-07 1.78e-05
Smp_045200.1 SmLINC06986-IBu 0.90 4.01e-06 1.00e-04
Smp_051210.3 SmLINC06986-IBu 0.90 4.25e-06 1.00e-04
Smp_055340.2 SmLINC06986-IBu 0.92 1.16e-06 5.94e-05
Smp_056460.1 SmLINC06986-IBu 0.95 3.91e-08 5.71e-06
Smp_058660.1 SmLINC06986-IBu 0.95 2.38e-08 4.08e-06
Smp_079420.1 SmLINC06986-IBu 0.94 1.66e-07 1.53e-05
Smp_095410.1 SmLINC06986-IBu 0.95 4.95e-08 6.70e-06
Smp_137000.2 SmLINC06986-IBu 0.92 9.19e-07 5.03e-05
Smp_137320.1 SmLINC06986-IBu 0.93 4.19e-07 2.90e-05
Smp_141680.1 SmLINC06986-IBu 0.92 1.02e-06 5.43e-05
Smp_145400.1 SmLINC06986-IBu 0.98 5.48e-11 7.98e-08
Smp_150980.2 SmLINC06986-IBu 0.92 1.18e-06 6.02e-05
Smp_151120.1 SmLINC06986-IBu 0.94 9.52e-08 1.04e-05
Smp_159070.2 SmLINC06986-IBu 0.91 1.58e-06 7.37e-05
Smp_170280.1 SmLINC06986-IBu 0.91 1.20e-06 6.08e-05
Smp_172480.1 SmLINC06986-IBu 0.95 3.54e-08 5.35e-06
Smp_172960.1 SmLINC06986-IBu 0.96 1.32e-08 2.75e-06
Smp_192780.1 SmLINC06986-IBu 0.90 3.86e-06 1.00e-04
Smp_194860.1 SmLINC06986-IBu 0.95 2.86e-08 4.63e-06
Smp_203090.1 SmLINC06986-IBu 0.93 4.77e-07 3.18e-05
Smp_205270.1 SmLINC06986-IBu 0.95 3.20e-08 4.99e-06