Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06982-IBu Data

Chromosome: SC 1242 - Coordinate: SC 1242:205-2374 - Strand: -


Fig. S5 for SmLINC06982-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC06982-IBu 0 -0.48 -2.87 -3.87 -4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC06982-IBu 0.92 9.89e-07 5.29e-05
Smp_036270.4 SmLINC06982-IBu 0.96 3.90e-09 1.23e-06
Smp_051230.4 SmLINC06982-IBu 0.90 3.18e-06 1.00e-04
Smp_111640.1 SmLINC06982-IBu 0.90 3.98e-06 1.00e-04
Smp_112090.1 SmLINC06982-IBu 0.94 1.42e-07 1.38e-05
Smp_168080.2 SmLINC06982-IBu 0.92 1.00e-06 5.35e-05
Smp_195070.1 SmLINC06982-IBu 0.90 3.55e-06 1.00e-04