Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06976-IBu Data

Chromosome: SC 0905 - Coordinate: SC 0905:2143-3140 - Strand: +


Fig. S5 for SmLINC06976-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06976-IBu 0 1.24 1.71 4.08 4.23
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC06976-IBu 0.91 1.84e-06 8.22e-05
Smp_045200.1 SmLINC06976-IBu 0.90 4.29e-06 1.00e-04
Smp_058660.1 SmLINC06976-IBu 0.94 1.16e-07 1.20e-05
Smp_137320.1 SmLINC06976-IBu 0.94 6.89e-08 8.39e-06
Smp_141680.1 SmLINC06976-IBu 0.91 1.69e-06 7.75e-05
Smp_145400.1 SmLINC06976-IBu 0.92 1.07e-06 5.63e-05
Smp_151120.1 SmLINC06976-IBu 0.91 1.48e-06 7.03e-05
Smp_170280.1 SmLINC06976-IBu 0.90 3.67e-06 1.00e-04
Smp_172960.1 SmLINC06976-IBu 0.90 2.90e-06 1.00e-04