Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06962-IBu Data

Chromosome: SC 0633 - Coordinate: SC 0633:680-11814 - Strand: -


Fig. S5 for SmLINC06962-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32
SmLINC06962-IBu 0 -0.14 -1.06 -4.74 -5.63
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC06962-IBu 0.91 2.09e-06 8.98e-05
Smp_033050.2 SmLINC06962-IBu 0.92 8.41e-07 4.72e-05
Smp_033260.1 SmLINC06962-IBu -0.91 1.38e-06 6.70e-05
Smp_038870.2 SmLINC06962-IBu -0.91 2.05e-06 8.85e-05
Smp_050350.3 SmLINC06962-IBu -0.91 2.15e-06 9.15e-05
Smp_052280.2 SmLINC06962-IBu -0.93 4.92e-07 3.25e-05
Smp_056460.1 SmLINC06962-IBu -0.90 2.56e-06 1.00e-04
Smp_079420.1 SmLINC06962-IBu -0.90 4.83e-06 1.00e-04
Smp_169670.1 SmLINC06962-IBu -0.91 1.27e-06 6.34e-05
Smp_176230.2 SmLINC06962-IBu 0.93 2.53e-07 2.05e-05
Smp_194860.1 SmLINC06962-IBu -0.90 2.73e-06 1.00e-04