Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06961-IBu Data

Chromosome: SC 0633 - Coordinate: SC 0633:680-11811 - Strand: -


Fig. S5 for SmLINC06961-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06961-IBu 0 -3.75 0.54 2.65 2.55
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC06961-IBu 0.92 5.63e-07 3.56e-05
Smp_031040.1 SmLINC06961-IBu 0.94 1.48e-07 1.41e-05
Smp_034980.2 SmLINC06961-IBu 0.94 1.51e-07 1.44e-05
Smp_040970.2 SmLINC06961-IBu 0.94 7.36e-08 8.78e-06
Smp_045200.1 SmLINC06961-IBu 0.93 2.19e-07 1.85e-05
Smp_051210.3 SmLINC06961-IBu 0.94 1.00e-07 1.08e-05
Smp_055340.2 SmLINC06961-IBu 0.92 9.30e-07 5.07e-05
Smp_058140.3 SmLINC06961-IBu 0.91 1.63e-06 7.53e-05
Smp_058660.1 SmLINC06961-IBu 0.90 2.85e-06 1.00e-04
Smp_068270.1 SmLINC06961-IBu 0.91 1.79e-06 8.06e-05
Smp_079420.1 SmLINC06961-IBu 0.91 1.90e-06 8.41e-05
Smp_082580.1 SmLINC06961-IBu 0.91 2.30e-06 9.62e-05
Smp_125200.1 SmLINC06961-IBu 0.91 2.02e-06 8.78e-05
Smp_141680.1 SmLINC06961-IBu 0.92 5.18e-07 3.37e-05
Smp_145400.1 SmLINC06961-IBu 0.94 7.70e-08 9.05e-06
Smp_150980.2 SmLINC06961-IBu 0.96 1.04e-08 2.35e-06
Smp_151120.1 SmLINC06961-IBu 0.92 8.74e-07 4.85e-05
Smp_154190.1 SmLINC06961-IBu 0.93 3.93e-07 2.78e-05
Smp_164550.1 SmLINC06961-IBu 0.92 7.30e-07 4.27e-05
Smp_170280.1 SmLINC06961-IBu 0.91 1.72e-06 7.85e-05
Smp_172480.1 SmLINC06961-IBu 0.96 1.08e-08 2.40e-06
Smp_172960.1 SmLINC06961-IBu 0.92 1.08e-06 5.64e-05
Smp_194860.1 SmLINC06961-IBu 0.91 2.12e-06 9.07e-05
Smp_194960.1 SmLINC06961-IBu 0.90 3.73e-06 1.00e-04
Smp_203090.1 SmLINC06961-IBu 0.94 1.87e-07 1.66e-05
Smp_205270.1 SmLINC06961-IBu 0.95 3.98e-08 5.79e-06