Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06953-IBu Data

Chromosome: SC 0536 - Coordinate: SC 0536:0-1270 - Strand: -


Fig. S5 for SmLINC06953-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC06953-IBu 0 -0.76 1.41 -2.13 -3.45
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_098370.1 0 9.63 11.25 6.43 9.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC06953-IBu 0.92 5.36e-07 3.45e-05
Smp_032120.1 SmLINC06953-IBu 0.94 7.31e-08 8.74e-06
Smp_062070.1 SmLINC06953-IBu 0.90 3.52e-06 1.00e-04
Smp_098370.1 SmLINC06953-IBu 0.90 3.87e-06 1.00e-04
Smp_138080.1 SmLINC06953-IBu 0.93 3.43e-07 2.53e-05
Smp_159070.3 SmLINC06953-IBu 0.94 1.33e-07 1.32e-05
Smp_160410.1 SmLINC06953-IBu 0.90 3.25e-06 1.00e-04