Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06907-IBu Data

Chromosome: SC 0361 - Coordinate: SC 0361:777-6204 - Strand: -


Fig. S5 for SmLINC06907-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
SmLINC06907-IBu 0 -0.27 -2.50 -6.73 -7.63
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC06907-IBu 0.96 1.32e-08 2.75e-06
Smp_051230.4 SmLINC06907-IBu 0.90 3.79e-06 1.00e-04
Smp_111640.1 SmLINC06907-IBu 0.93 5.15e-07 3.35e-05
Smp_112090.1 SmLINC06907-IBu 0.95 2.54e-08 4.27e-06
Smp_165300.1 SmLINC06907-IBu 0.93 5.13e-07 3.34e-05
Smp_205450.1 SmLINC06907-IBu 0.90 3.23e-06 1.00e-04