Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06890-IBu Data

Chromosome: SC 0331 - Coordinate: SC 0331:39949-44140 - Strand: -


Fig. 6A for SmLINC06890-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_167680.1 0 -1.95 -2.65 -4.96 -10.61
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_175890.1 0 -0.96 -2.50 -8.62 -9.58
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_161000.2 0 -1.02 -2.38 -7.73 -8.46
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_089060.3 0 -1.26 -3.75 -9.22 -7.07
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_074200.1 0 -1.40 -4.07 -6.05 -6.98
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_136240.9 0 -3.09 -3.16 -4.37 -6.52
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
Smp_114220.1 0 -0.84 -2.09 -5.04 -6.34
Smp_093930.1 0 -2.05 -2.86 -4.42 -6.13
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_213910.1 0 -1.33 -3.68 -2.65 -4.53
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_050830.1 0 -1.69 -2.62 -4.49 -4.19
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_071390.1 0 -3.12 -4.67 -2.84 -3.82
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_112480.1 0 -3.87 -4.82 -3.33 -2.83
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000330.1 SmLINC06890-IBu 0.92 1.17e-06 5.75e-05
Smp_002510.1 SmLINC06890-IBu 0.92 7.49e-07 4.18e-05
Smp_005880.1 SmLINC06890-IBu 0.98 1.56e-10 1.42e-07
Smp_007270.2 SmLINC06890-IBu 0.83 9.63e-05 1.30e-03
Smp_009310.4 SmLINC06890-IBu 0.93 2.32e-07 1.84e-05
Smp_009650.1 SmLINC06890-IBu 0.98 1.39e-11 3.06e-08
Smp_010000.1 SmLINC06890-IBu 0.98 1.66e-11 3.42e-08
Smp_014670.1 SmLINC06890-IBu 0.87 1.67e-05 3.00e-04
Smp_016730.1 SmLINC06890-IBu 0.91 2.04e-06 8.51e-05
Smp_020550.1 SmLINC06890-IBu 0.96 7.98e-09 1.83e-06
Smp_028990.3 SmLINC06890-IBu 0.87 2.16e-05 4.00e-04
Smp_030500.1 SmLINC06890-IBu 0.87 2.18e-05 4.00e-04
Smp_031000.1 SmLINC06890-IBu 0.90 4.68e-06 1.00e-04
Smp_032980.1 SmLINC06890-IBu 0.90 3.69e-06 1.00e-04
Smp_033400.1 SmLINC06890-IBu 0.85 5.50e-05 9.00e-04
Smp_034420.1 SmLINC06890-IBu 0.91 2.45e-06 9.71e-05
Smp_034550.1 SmLINC06890-IBu 0.81 2.00e-04 2.50e-03
Smp_034940.3 SmLINC06890-IBu 0.81 1.00e-04 2.20e-03
Smp_035090.2 SmLINC06890-IBu 0.82 1.00e-04 1.70e-03
Smp_035270.2 SmLINC06890-IBu 0.83 9.20e-05 1.30e-03
Smp_036250.1 SmLINC06890-IBu 0.85 5.80e-05 9.00e-04
Smp_038100.1 SmLINC06890-IBu 0.91 1.50e-06 6.87e-05
Smp_038530.1 SmLINC06890-IBu 0.87 1.60e-05 3.00e-04
Smp_038730.10 SmLINC06890-IBu 0.81 2.00e-04 2.70e-03
Smp_042160.2 SmLINC06890-IBu 0.86 2.70e-05 5.00e-04
Smp_043670.2 SmLINC06890-IBu 0.95 2.53e-08 4.01e-06
Smp_046800.2 SmLINC06890-IBu 0.88 1.44e-05 3.00e-04
Smp_046930.1 SmLINC06890-IBu 0.81 2.00e-04 2.70e-03
Smp_050830.1 SmLINC06890-IBu 0.86 3.04e-05 5.00e-04
Smp_055770.1 SmLINC06890-IBu 0.91 2.28e-06 9.23e-05
Smp_061940.2 SmLINC06890-IBu 0.92 1.17e-06 5.75e-05
Smp_062720.2 SmLINC06890-IBu 0.94 1.53e-07 1.37e-05
Smp_063090.1 SmLINC06890-IBu 0.91 2.40e-06 9.58e-05
Smp_071390.1 SmLINC06890-IBu 0.87 2.06e-05 4.00e-04
Smp_072110.1 SmLINC06890-IBu 0.80 3.00e-04 3.40e-03
Smp_074200.1 SmLINC06890-IBu 0.80 2.00e-04 3.10e-03
Smp_076010.1 SmLINC06890-IBu 0.96 9.16e-09 2.01e-06
Smp_079220.1 SmLINC06890-IBu 0.87 2.42e-05 5.00e-04
Smp_079920.1 SmLINC06890-IBu 0.92 9.92e-07 5.10e-05
Smp_079970.1 SmLINC06890-IBu 0.94 1.15e-07 1.13e-05
Smp_080920.3 SmLINC06890-IBu 0.81 2.00e-04 2.60e-03
Smp_083340.1 SmLINC06890-IBu 0.86 2.94e-05 5.00e-04
Smp_083720.1 SmLINC06890-IBu 0.90 3.03e-06 1.00e-04
Smp_087250.1 SmLINC06890-IBu 0.92 8.73e-07 4.66e-05
Smp_088610.1 SmLINC06890-IBu 0.88 1.14e-05 2.00e-04
Smp_089060.3 SmLINC06890-IBu 0.86 3.45e-05 6.00e-04
Smp_092320.1 SmLINC06890-IBu 0.88 1.50e-05 3.00e-04
Smp_093930.1 SmLINC06890-IBu 0.86 3.33e-05 6.00e-04
Smp_096020.1 SmLINC06890-IBu 0.93 4.30e-07 2.83e-05
Smp_099670.1 SmLINC06890-IBu 0.85 5.44e-05 9.00e-04
Smp_099680.1 SmLINC06890-IBu 0.90 3.48e-06 1.00e-04
Smp_111320.1 SmLINC06890-IBu 0.91 2.49e-06 9.82e-05
Smp_112480.1 SmLINC06890-IBu 0.87 1.79e-05 4.00e-04
Smp_114220.1 SmLINC06890-IBu 0.82 1.00e-04 2.00e-03
Smp_124340.1 SmLINC06890-IBu 0.98 4.70e-12 1.56e-08
Smp_125090.1 SmLINC06890-IBu 0.83 1.00e-04 1.50e-03
Smp_129610.1 SmLINC06890-IBu 0.95 2.12e-08 3.55e-06
Smp_134410.1 SmLINC06890-IBu 0.83 1.00e-04 1.40e-03
Smp_136240.9 SmLINC06890-IBu 0.81 1.00e-04 2.30e-03
Smp_137520.1 SmLINC06890-IBu 0.97 5.39e-10 3.16e-07
Smp_140270.1 SmLINC06890-IBu 0.96 2.49e-09 8.53e-07
Smp_141630.1 SmLINC06890-IBu 0.83 1.00e-04 1.60e-03
Smp_152260.1 SmLINC06890-IBu 0.80 3.00e-04 3.40e-03
Smp_152780.1 SmLINC06890-IBu 0.90 2.65e-06 1.00e-04
Smp_153600.1 SmLINC06890-IBu 0.95 4.37e-08 5.82e-06
Smp_154370.1 SmLINC06890-IBu 0.81 2.00e-04 2.40e-03
Smp_155890.1 SmLINC06890-IBu 0.81 2.00e-04 2.70e-03
Smp_159600.1 SmLINC06890-IBu 0.93 2.94e-07 2.17e-05
Smp_161000.2 SmLINC06890-IBu 0.81 1.00e-04 2.20e-03
Smp_165300.1 SmLINC06890-IBu 0.82 1.00e-04 1.80e-03
Smp_167680.1 SmLINC06890-IBu 0.80 2.00e-04 2.80e-03
Smp_170800.1 SmLINC06890-IBu 0.88 1.48e-05 3.00e-04
Smp_174560.1 SmLINC06890-IBu 0.90 3.66e-06 1.00e-04
Smp_175190.1 SmLINC06890-IBu 0.94 1.72e-07 1.49e-05
Smp_175890.1 SmLINC06890-IBu 0.80 3.00e-04 3.20e-03
Smp_177520.1 SmLINC06890-IBu 0.83 8.90e-05 1.20e-03
Smp_178530.1 SmLINC06890-IBu 0.90 2.59e-06 1.00e-04
Smp_178620.1 SmLINC06890-IBu 0.87 1.86e-05 4.00e-04
Smp_178630.1 SmLINC06890-IBu 0.98 2.95e-12 1.16e-08
Smp_182890.1 SmLINC06890-IBu 0.97 4.03e-10 2.62e-07
Smp_183020.13 SmLINC06890-IBu 0.91 1.81e-06 7.85e-05
Smp_184750.1 SmLINC06890-IBu 0.81 2.00e-04 2.50e-03
Smp_186130.1 SmLINC06890-IBu 0.93 2.76e-07 2.07e-05
Smp_187350.1 SmLINC06890-IBu 0.89 7.32e-06 2.00e-04
Smp_188880.1 SmLINC06890-IBu 0.89 7.90e-06 2.00e-04
Smp_192890.1 SmLINC06890-IBu 0.88 1.17e-05 2.00e-04
Smp_194770.1 SmLINC06890-IBu 0.92 1.12e-06 5.59e-05
Smp_195140.1 SmLINC06890-IBu 0.89 8.19e-06 2.00e-04
Smp_195160.1 SmLINC06890-IBu 0.82 1.00e-04 2.10e-03
Smp_196050.1 SmLINC06890-IBu 0.95 2.36e-08 3.82e-06
Smp_197110.1 SmLINC06890-IBu 0.80 2.00e-04 2.90e-03
Smp_198950.1 SmLINC06890-IBu 0.93 4.19e-07 2.78e-05
Smp_200320.1 SmLINC06890-IBu 0.96 4.20e-09 1.20e-06
Smp_204770.1 SmLINC06890-IBu 0.94 1.70e-07 1.48e-05
Smp_205550.1 SmLINC06890-IBu 0.92 7.40e-07 4.14e-05
Smp_205860.1 SmLINC06890-IBu 0.94 6.54e-08 7.67e-06
Smp_206200.1 SmLINC06890-IBu 0.96 2.61e-09 8.79e-07
Smp_213910.1 SmLINC06890-IBu 0.96 8.66e-09 1.94e-06
Fig. S5 for SmLINC06890-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031000.1 SmLINC06890-IBu 0.90 4.68e-06 1.00e-04
Smp_032980.1 SmLINC06890-IBu 0.90 3.69e-06 1.00e-04
Smp_043670.2 SmLINC06890-IBu 0.95 2.53e-08 4.26e-06
Smp_055770.1 SmLINC06890-IBu 0.91 2.28e-06 9.55e-05
Smp_061940.2 SmLINC06890-IBu 0.92 1.17e-06 5.97e-05
Smp_079970.1 SmLINC06890-IBu 0.94 1.15e-07 1.19e-05
Smp_096020.1 SmLINC06890-IBu 0.93 4.30e-07 2.96e-05
Smp_152780.1 SmLINC06890-IBu 0.90 2.65e-06 1.00e-04
Smp_182890.1 SmLINC06890-IBu 0.97 4.03e-10 2.85e-07
Smp_186130.1 SmLINC06890-IBu 0.93 2.76e-07 2.17e-05
Smp_205860.1 SmLINC06890-IBu 0.94 6.54e-08 8.11e-06
Smp_206200.1 SmLINC06890-IBu 0.96 2.61e-09 9.45e-07