Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06852-IBu Data

Chromosome: SC 0279 - Coordinate: SC 0279:67710-72886 - Strand: +


Fig. S5 for SmLINC06852-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC06852-IBu 0 -0.66 -1.67 -3.89 -4.94
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_055340.2 0 8.73 10.47 12.13 12.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC06852-IBu 0.91 1.64e-06 7.57e-05
Smp_035200.3 SmLINC06852-IBu 0.92 9.46e-07 5.13e-05
Smp_036270.4 SmLINC06852-IBu 0.96 4.70e-09 1.38e-06
Smp_055340.2 SmLINC06852-IBu -0.90 3.47e-06 1.00e-04
Smp_111640.1 SmLINC06852-IBu 0.90 4.63e-06 1.00e-04
Smp_157140.1 SmLINC06852-IBu -0.90 3.45e-06 1.00e-04
Smp_160230.1 SmLINC06852-IBu 0.96 1.25e-08 2.65e-06
Smp_168080.2 SmLINC06852-IBu 0.91 2.44e-06 1.00e-04
Smp_195070.1 SmLINC06852-IBu 0.90 3.99e-06 1.00e-04