Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06839-IBu Data

Chromosome: SC 0270 - Coordinate: SC 0270:0-1562 - Strand: +


Fig. S5 for SmLINC06839-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC06839-IBu 0.90 3.29e-06 1.00e-04
Smp_032120.1 SmLINC06839-IBu 0.93 5.07e-07 3.31e-05
Smp_036270.3 SmLINC06839-IBu 0.90 3.95e-06 1.00e-04
Smp_098890.1 SmLINC06839-IBu 0.95 3.15e-08 4.94e-06
Smp_159070.3 SmLINC06839-IBu 0.92 7.71e-07 4.44e-05
Smp_160410.1 SmLINC06839-IBu 0.92 7.30e-07 4.28e-05
Smp_168800.1 SmLINC06839-IBu 0.92 7.58e-07 4.39e-05
Smp_194060.1 SmLINC06839-IBu 0.93 2.84e-07 2.22e-05
Smp_200120.1 SmLINC06839-IBu 0.96 4.14e-09 1.27e-06