Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06818-IBu Data

Chromosome: SC 0255 - Coordinate: SC 0255:140085-144463 - Strand: +


Fig. S5 for SmLINC06818-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC06818-IBu 0 -0.47 6.07 -3.17 -3.17
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC06818-IBu 0.93 2.01e-07 1.74e-05
Smp_042090.3 SmLINC06818-IBu 0.99 3.03e-15 1.86e-10
Smp_062420.4 SmLINC06818-IBu 0.95 3.25e-08 5.05e-06
Smp_085110.3 SmLINC06818-IBu 0.98 5.27e-12 1.85e-08