Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06801-IBu Data

Chromosome: SC 0250 - Coordinate: SC 0250:73366-74841 - Strand: -


Fig. S5 for SmLINC06801-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06801-IBu 0 -0.54 0.90 -0.25 5.25
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 SmLINC06801-IBu 0.93 2.53e-07 2.04e-05
Smp_089270.1 SmLINC06801-IBu 0.97 2.86e-10 2.28e-07
Smp_137460.1 SmLINC06801-IBu 0.93 3.74e-07 2.68e-05
Smp_152150.1 SmLINC06801-IBu 0.97 1.51e-09 6.64e-07
Smp_164400.1 SmLINC06801-IBu 0.95 3.26e-08 5.06e-06
Smp_167830.1 SmLINC06801-IBu 0.97 3.11e-10 2.42e-07
Smp_170840.1 SmLINC06801-IBu 0.98 3.14e-11 5.64e-08