Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06800-IBu Data

Chromosome: SC 0250 - Coordinate: SC 0250:73366-74828 - Strand: -


Fig. S5 for SmLINC06800-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06800-IBu 0 -3.84 -1.17 -0.07 3.49
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC06800-IBu 0.93 3.86e-07 2.74e-05
Smp_004420.3 SmLINC06800-IBu 0.97 1.42e-09 6.39e-07
Smp_016490.2 SmLINC06800-IBu 0.92 6.77e-07 4.06e-05
Smp_028870.1 SmLINC06800-IBu 0.91 1.36e-06 6.65e-05
Smp_041540.1 SmLINC06800-IBu 0.93 4.31e-07 2.96e-05
Smp_070540.1 SmLINC06800-IBu 0.92 8.12e-07 4.61e-05
Smp_085180.1 SmLINC06800-IBu 0.92 9.56e-07 5.17e-05
Smp_086450.3 SmLINC06800-IBu 0.93 4.45e-07 3.03e-05
Smp_102780.1 SmLINC06800-IBu 0.92 8.79e-07 4.87e-05
Smp_105450.1 SmLINC06800-IBu 0.95 4.15e-08 5.95e-06
Smp_105450.2 SmLINC06800-IBu 0.96 6.45e-09 1.70e-06
Smp_123880.1 SmLINC06800-IBu 0.90 2.63e-06 1.00e-04
Smp_126340.1 SmLINC06800-IBu 0.93 4.22e-07 2.92e-05
Smp_130100.1 SmLINC06800-IBu 0.93 2.92e-07 2.26e-05
Smp_130970.1 SmLINC06800-IBu 0.92 7.08e-07 4.19e-05
Smp_131410.1 SmLINC06800-IBu 0.91 2.29e-06 9.57e-05
Smp_131490.1 SmLINC06800-IBu 0.90 4.44e-06 1.00e-04
Smp_136730.1 SmLINC06800-IBu 0.94 9.80e-08 1.06e-05
Smp_137460.1 SmLINC06800-IBu 0.95 4.98e-08 6.74e-06
Smp_137700.1 SmLINC06800-IBu 0.97 4.52e-10 3.06e-07
Smp_137720.1 SmLINC06800-IBu 0.93 1.95e-07 1.71e-05
Smp_138360.1 SmLINC06800-IBu 0.97 9.74e-10 5.00e-07
Smp_139160.1 SmLINC06800-IBu 0.96 5.55e-09 1.54e-06
Smp_139240.1 SmLINC06800-IBu 0.93 3.46e-07 2.54e-05
Smp_144440.1 SmLINC06800-IBu 0.90 3.95e-06 1.00e-04
Smp_152150.1 SmLINC06800-IBu 0.92 1.01e-06 5.38e-05
Smp_159650.1 SmLINC06800-IBu 0.92 5.77e-07 3.63e-05
Smp_162320.1 SmLINC06800-IBu 0.94 1.36e-07 1.34e-05
Smp_163700.1 SmLINC06800-IBu 0.90 4.46e-06 1.00e-04
Smp_164320.1 SmLINC06800-IBu 0.91 1.90e-06 8.40e-05
Smp_164400.1 SmLINC06800-IBu 0.94 8.97e-08 1.00e-05
Smp_181070.1 SmLINC06800-IBu 0.96 9.74e-09 2.24e-06
Smp_187140.1 SmLINC06800-IBu 0.93 2.48e-07 2.02e-05
Smp_194380.1 SmLINC06800-IBu 0.90 2.71e-06 1.00e-04
Smp_194910.1 SmLINC06800-IBu 0.95 4.04e-08 5.85e-06
Smp_203030.1 SmLINC06800-IBu 0.91 1.70e-06 7.78e-05
Smp_205580.1 SmLINC06800-IBu 0.94 1.07e-07 1.13e-05