Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06799-IBu Data

Chromosome: SC 0249 - Coordinate: SC 0249:64520-66863 - Strand: +


Fig. S5 for SmLINC06799-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
SmLINC06799-IBu 0 -0.52 -0.67 -3.14 -5.31
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC06799-IBu 0.91 1.99e-06 8.66e-05
Smp_024180.1 SmLINC06799-IBu -0.92 9.61e-07 5.19e-05
Smp_024180.2 SmLINC06799-IBu -0.95 4.44e-08 6.23e-06
Smp_033260.1 SmLINC06799-IBu -0.97 8.22e-10 4.49e-07
Smp_038870.2 SmLINC06799-IBu -0.95 3.43e-08 5.23e-06
Smp_040970.2 SmLINC06799-IBu -0.91 1.70e-06 7.76e-05
Smp_050350.3 SmLINC06799-IBu -0.95 2.74e-08 4.50e-06
Smp_052280.2 SmLINC06799-IBu -0.93 4.84e-07 3.21e-05
Smp_056460.1 SmLINC06799-IBu -0.96 8.45e-09 2.04e-06
Smp_079420.1 SmLINC06799-IBu -0.94 1.03e-07 1.11e-05
Smp_094050.1 SmLINC06799-IBu -0.94 1.69e-07 1.55e-05
Smp_095410.1 SmLINC06799-IBu -0.91 2.25e-06 9.47e-05
Smp_137000.2 SmLINC06799-IBu -0.91 1.60e-06 7.44e-05
Smp_137810.1 SmLINC06799-IBu -0.90 4.05e-06 1.00e-04
Smp_140720.1 SmLINC06799-IBu -0.91 2.14e-06 9.12e-05
Smp_155570.1 SmLINC06799-IBu -0.94 9.90e-08 1.07e-05
Smp_156930.1 SmLINC06799-IBu -0.95 2.81e-08 4.57e-06
Smp_172960.1 SmLINC06799-IBu -0.92 8.47e-07 4.75e-05
Smp_192780.1 SmLINC06799-IBu -0.94 1.13e-07 1.18e-05
Smp_194860.1 SmLINC06799-IBu -0.95 5.05e-08 6.80e-06
Smp_201910.1 SmLINC06799-IBu -0.91 2.41e-06 9.93e-05
Smp_202610.1 SmLINC06799-IBu -0.92 6.48e-07 3.93e-05
Smp_203030.1 SmLINC06799-IBu -0.90 3.07e-06 1.00e-04
Smp_203090.1 SmLINC06799-IBu -0.91 1.62e-06 7.52e-05
Smp_212510.1 SmLINC06799-IBu 0.90 3.23e-06 1.00e-04