Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06797-IBu Data

Chromosome: SC 0248 - Coordinate: SC 0248:128902-130894 - Strand: -


Fig. S5 for SmLINC06797-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC06797-IBu 0.93 1.98e-07 1.73e-05
Smp_004420.3 SmLINC06797-IBu 0.90 2.90e-06 1.00e-04
Smp_004780.3 SmLINC06797-IBu 0.92 9.94e-07 5.31e-05
Smp_016490.2 SmLINC06797-IBu 0.92 7.03e-07 4.16e-05
Smp_028870.1 SmLINC06797-IBu 0.91 1.81e-06 8.13e-05
Smp_086450.3 SmLINC06797-IBu 0.91 1.90e-06 8.40e-05
Smp_102780.1 SmLINC06797-IBu 0.91 2.37e-06 9.81e-05
Smp_130100.1 SmLINC06797-IBu 0.94 1.44e-07 1.39e-05
Smp_130970.1 SmLINC06797-IBu 0.96 1.08e-08 2.41e-06
Smp_131110.2 SmLINC06797-IBu 0.90 3.63e-06 1.00e-04
Smp_137460.1 SmLINC06797-IBu 0.92 9.26e-07 5.05e-05
Smp_137700.1 SmLINC06797-IBu 0.90 2.75e-06 1.00e-04
Smp_138360.1 SmLINC06797-IBu 0.93 3.21e-07 2.42e-05
Smp_140720.1 SmLINC06797-IBu 0.90 2.67e-06 1.00e-04
Smp_144440.1 SmLINC06797-IBu 0.92 9.51e-07 5.15e-05
Smp_152150.1 SmLINC06797-IBu 0.90 4.03e-06 1.00e-04
Smp_159650.1 SmLINC06797-IBu 0.94 1.17e-07 1.20e-05
Smp_162320.1 SmLINC06797-IBu 0.90 3.19e-06 1.00e-04
Smp_164400.1 SmLINC06797-IBu 0.90 4.64e-06 1.00e-04
Smp_175560.1 SmLINC06797-IBu 0.91 1.91e-06 8.44e-05
Smp_181070.1 SmLINC06797-IBu 0.92 1.17e-06 5.97e-05
Smp_203030.1 SmLINC06797-IBu 0.93 2.17e-07 1.84e-05