Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06779-IBu Data

Chromosome: SC 0248 - Coordinate: SC 0248:123688-130956 - Strand: -


Fig. S5 for SmLINC06779-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
SmLINC06779-IBu 0 4.01 4.11 0.72 1.12
Smp_021340.3 0 9.76 11.05 9.34 9.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC06779-IBu 0.93 3.97e-07 2.80e-05
Smp_021340.3 SmLINC06779-IBu 0.90 3.48e-06 1.00e-04
Smp_024140.1 SmLINC06779-IBu 0.93 2.64e-07 2.11e-05
Smp_083380.2 SmLINC06779-IBu 0.90 4.23e-06 1.00e-04