Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06740-IBu Data

Chromosome: SC 0224 - Coordinate: SC 0224:210098-210859 - Strand: +


Fig. S5 for SmLINC06740-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06740-IBu 0 1.19 0.13 3.75 3.91
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_130790.1 0 8.99 8.69 10.99 11.23
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC06740-IBu 0.90 3.08e-06 1.00e-04
Smp_031040.1 SmLINC06740-IBu 0.96 7.49e-09 1.88e-06
Smp_040970.2 SmLINC06740-IBu 0.90 3.37e-06 1.00e-04
Smp_051210.3 SmLINC06740-IBu 0.92 1.03e-06 5.48e-05
Smp_079420.1 SmLINC06740-IBu 0.92 7.07e-07 4.18e-05
Smp_083990.2 SmLINC06740-IBu 0.92 7.65e-07 4.42e-05
Smp_123550.1 SmLINC06740-IBu 0.93 3.01e-07 2.31e-05
Smp_130790.1 SmLINC06740-IBu 0.90 2.74e-06 1.00e-04
Smp_137000.2 SmLINC06740-IBu 0.94 1.19e-07 1.22e-05
Smp_145400.1 SmLINC06740-IBu 0.90 3.11e-06 1.00e-04
Smp_150980.2 SmLINC06740-IBu 0.92 5.96e-07 3.71e-05
Smp_151120.1 SmLINC06740-IBu 0.93 4.87e-07 3.22e-05
Smp_156930.1 SmLINC06740-IBu 0.90 4.59e-06 1.00e-04
Smp_166860.1 SmLINC06740-IBu 0.93 2.59e-07 2.08e-05
Smp_172480.1 SmLINC06740-IBu 0.92 5.77e-07 3.63e-05
Smp_172960.1 SmLINC06740-IBu 0.93 4.93e-07 3.25e-05
Smp_194860.1 SmLINC06740-IBu 0.92 7.07e-07 4.18e-05
Smp_203090.1 SmLINC06740-IBu 0.95 4.38e-08 6.18e-06
Smp_205270.1 SmLINC06740-IBu 0.91 1.45e-06 6.95e-05