Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06732-IBu Data

Chromosome: SC 0224 - Coordinate: SC 0224:33366-37126 - Strand: -


Fig. S5 for SmLINC06732-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC06732-IBu 0 -0.33 -2.47 7.84 7.83
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC06732-IBu 0.91 1.46e-06 6.97e-05
Smp_031040.1 SmLINC06732-IBu 0.98 1.35e-10 1.41e-07
Smp_033260.1 SmLINC06732-IBu 0.94 1.67e-07 1.54e-05
Smp_034980.2 SmLINC06732-IBu 0.91 2.14e-06 9.13e-05
Smp_038870.2 SmLINC06732-IBu 0.92 1.19e-06 6.05e-05
Smp_040970.2 SmLINC06732-IBu 0.95 1.51e-08 3.01e-06
Smp_045200.1 SmLINC06732-IBu 0.92 6.28e-07 3.85e-05
Smp_050350.3 SmLINC06732-IBu 0.90 4.08e-06 1.00e-04
Smp_051210.3 SmLINC06732-IBu 0.94 8.87e-08 9.97e-06
Smp_056460.1 SmLINC06732-IBu 0.92 9.48e-07 5.14e-05
Smp_058140.3 SmLINC06732-IBu 0.93 4.93e-07 3.25e-05
Smp_058660.1 SmLINC06732-IBu 0.95 5.54e-08 7.24e-06
Smp_068270.1 SmLINC06732-IBu 0.90 2.53e-06 1.00e-04
Smp_079420.1 SmLINC06732-IBu 0.96 8.15e-09 1.99e-06
Smp_081920.1 SmLINC06732-IBu 0.92 8.08e-07 4.59e-05
Smp_082580.1 SmLINC06732-IBu 0.92 6.50e-07 3.94e-05
Smp_094050.1 SmLINC06732-IBu 0.90 2.94e-06 1.00e-04
Smp_123200.1 SmLINC06732-IBu 0.90 3.89e-06 1.00e-04
Smp_123550.1 SmLINC06732-IBu 0.95 1.93e-08 3.54e-06
Smp_131840.1 SmLINC06732-IBu 0.90 4.62e-06 1.00e-04
Smp_137000.2 SmLINC06732-IBu 0.95 2.04e-08 3.68e-06
Smp_137320.1 SmLINC06732-IBu 0.93 4.65e-07 3.12e-05
Smp_141680.1 SmLINC06732-IBu 0.94 8.45e-08 9.65e-06
Smp_145400.1 SmLINC06732-IBu 0.95 3.86e-08 5.67e-06
Smp_150980.2 SmLINC06732-IBu 0.96 7.91e-09 1.95e-06
Smp_151120.1 SmLINC06732-IBu 0.97 1.05e-09 5.26e-07
Smp_154190.1 SmLINC06732-IBu 0.91 2.43e-06 1.00e-04
Smp_156930.1 SmLINC06732-IBu 0.94 1.66e-07 1.53e-05
Smp_159070.2 SmLINC06732-IBu 0.95 3.81e-08 5.61e-06
Smp_166860.1 SmLINC06732-IBu 0.95 2.74e-08 4.49e-06
Smp_170280.1 SmLINC06732-IBu 0.91 1.73e-06 7.85e-05
Smp_172480.1 SmLINC06732-IBu 0.98 2.22e-11 4.52e-08
Smp_172960.1 SmLINC06732-IBu 0.97 2.42e-10 2.05e-07
Smp_194860.1 SmLINC06732-IBu 0.97 1.53e-09 6.71e-07
Smp_194960.1 SmLINC06732-IBu 0.91 1.39e-06 6.73e-05
Smp_203090.1 SmLINC06732-IBu 0.99 7.41e-15 3.35e-10
Smp_205270.1 SmLINC06732-IBu 0.97 2.16e-10 1.90e-07