Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06730-IBu Data

Chromosome: SC 0224 - Coordinate: SC 0224:33366-37126 - Strand: -


Fig. S5 for SmLINC06730-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06730-IBu 0 1.29 -3.17 5.31 2.53
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC06730-IBu 0.94 1.85e-07 1.65e-05
Smp_014780.1 SmLINC06730-IBu 0.92 7.29e-07 4.27e-05
Smp_017610.1 SmLINC06730-IBu 0.95 5.84e-08 7.50e-06
Smp_045200.1 SmLINC06730-IBu 0.90 4.10e-06 1.00e-04
Smp_068270.1 SmLINC06730-IBu 0.90 2.73e-06 1.00e-04
Smp_081920.1 SmLINC06730-IBu 0.91 2.24e-06 9.43e-05
Smp_082580.1 SmLINC06730-IBu 0.93 2.51e-07 2.03e-05
Smp_084270.1 SmLINC06730-IBu 0.92 5.19e-07 3.37e-05
Smp_105730.1 SmLINC06730-IBu 0.96 1.13e-08 2.48e-06
Smp_118560.1 SmLINC06730-IBu 0.93 3.12e-07 2.37e-05
Smp_125200.1 SmLINC06730-IBu 0.93 4.14e-07 2.88e-05
Smp_125210.1 SmLINC06730-IBu 0.93 3.97e-07 2.79e-05
Smp_128510.1 SmLINC06730-IBu 0.92 6.29e-07 3.85e-05
Smp_131840.1 SmLINC06730-IBu 0.96 2.40e-09 8.96e-07
Smp_134960.1 SmLINC06730-IBu 0.92 6.78e-07 4.06e-05
Smp_154180.1 SmLINC06730-IBu 0.97 6.03e-10 3.68e-07
Smp_154190.1 SmLINC06730-IBu 0.97 7.29e-10 4.16e-07
Smp_160360.1 SmLINC06730-IBu 0.97 2.23e-09 8.55e-07
Smp_164550.1 SmLINC06730-IBu 0.95 2.09e-08 3.75e-06
Smp_172520.1 SmLINC06730-IBu 0.94 8.51e-08 9.69e-06
Smp_175020.1 SmLINC06730-IBu 0.91 1.23e-06 6.19e-05
Smp_194960.1 SmLINC06730-IBu 0.94 1.34e-07 1.32e-05
Smp_194970.1 SmLINC06730-IBu 0.94 1.03e-07 1.11e-05
Smp_194980.1 SmLINC06730-IBu 0.93 3.14e-07 2.38e-05
Smp_197400.1 SmLINC06730-IBu 0.97 6.95e-10 4.03e-07