Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06563-IBu Data

Chromosome: SC 0186 - Coordinate: SC 0186:87543-89967 - Strand: +


Fig. S5 for SmLINC06563-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC06563-IBu 0 -0.01 -1.84 -6.93 -6.95
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC06563-IBu 0.95 1.58e-08 3.09e-06
Smp_035200.3 SmLINC06563-IBu 0.95 1.93e-08 3.55e-06
Smp_036270.4 SmLINC06563-IBu 0.96 1.36e-08 2.80e-06
Smp_111640.1 SmLINC06563-IBu 0.94 8.23e-08 9.47e-06
Smp_125070.1 SmLINC06563-IBu 0.91 1.82e-06 8.14e-05
Smp_160230.1 SmLINC06563-IBu 0.91 1.38e-06 6.70e-05
Smp_182090.1 SmLINC06563-IBu 0.93 2.43e-07 1.99e-05
Smp_184710.1 SmLINC06563-IBu 0.94 1.74e-07 1.58e-05
Smp_204360.1 SmLINC06563-IBu 0.93 4.26e-07 2.94e-05
Smp_205450.1 SmLINC06563-IBu 0.90 4.73e-06 1.00e-04