Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06561-IBu Data

Chromosome: SC 0186 - Coordinate: SC 0186:64333-67470 - Strand: -


Fig. S5 for SmLINC06561-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC06561-IBu 0 0.50 -0.92 -3.69 -3.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111640.1 SmLINC06561-IBu 0.91 1.44e-06 6.90e-05
Smp_184710.1 SmLINC06561-IBu 0.97 4.73e-10 3.15e-07
Smp_185170.1 SmLINC06561-IBu 0.92 9.60e-07 5.18e-05
Smp_185830.1 SmLINC06561-IBu 0.92 1.03e-06 5.45e-05
Smp_204360.1 SmLINC06561-IBu 0.95 2.72e-08 4.46e-06
Smp_205450.1 SmLINC06561-IBu 0.92 6.83e-07 4.08e-05