Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06551-IBu Data

Chromosome: SC 0184 - Coordinate: SC 0184:438308-439534 - Strand: +


Fig. S5 for SmLINC06551-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC06551-IBu 0 0.64 -1.60 -2.60 -6.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC06551-IBu 0.90 3.88e-06 1.00e-04
Smp_036270.4 SmLINC06551-IBu 0.90 2.87e-06 1.00e-04
Smp_111640.1 SmLINC06551-IBu 0.95 5.25e-08 6.98e-06
Smp_112090.1 SmLINC06551-IBu 0.90 2.78e-06 1.00e-04
Smp_125070.1 SmLINC06551-IBu 0.92 5.62e-07 3.56e-05
Smp_184710.1 SmLINC06551-IBu 0.96 5.31e-09 1.50e-06
Smp_185170.1 SmLINC06551-IBu 0.90 4.73e-06 1.00e-04
Smp_185680.1 SmLINC06551-IBu 0.92 1.02e-06 5.44e-05
Smp_185830.1 SmLINC06551-IBu 0.94 1.11e-07 1.16e-05
Smp_204360.1 SmLINC06551-IBu 0.95 5.92e-08 7.57e-06
Smp_205450.1 SmLINC06551-IBu 0.91 1.49e-06 7.07e-05