Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06489-IBu Data

Chromosome: SC 0179 - Coordinate: SC 0179:0-5001 - Strand: +


Fig. 7A S3 for SmLINC06489-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_157620.1 0 -1.34 2.10 4.24 3.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_157620.1 SmLINC06489-IBu -0.52 4.53e-02 1.04e-01
Fig. 6A for SmLINC06489-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_078310.2 0 0.40 -0.51 -3.28 -9.72
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00
Smp_202340.1 0 0.90 1.72 -6.17 -6.91
Smp_032580.1 0 -0.52 -0.98 -8.52 -6.88
Smp_109300.1 0 0.26 -0.46 -4.85 -6.86
Smp_120920.1 0 -0.66 -0.48 -5.47 -6.72
Smp_059210.2 0 -0.42 -0.55 -4.87 -6.09
Smp_141020.1 0 -0.45 -0.94 -9.20 -5.95
Smp_204940.1 0 0.14 1.05 -5.47 -5.25
Smp_120020.1 0 -0.19 -0.59 -3.84 -5.21
Smp_148570.1 0 2.59 1.60 -3.08 -5.21
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_071640.1 0 -0.48 -1.03 -6.28 -5.01
Smp_078550.1 0 -0.05 -0.57 -4.38 -4.91
Smp_011660.2 0 -0.07 -0.17 -3.53 -4.85
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_002920.1 0 0.04 -0.86 -3.56 -4.70
Smp_177900.1 0 -0.46 -0.44 -3.24 -4.66
Smp_198650.1 0 -0.01 -1.08 -4.05 -4.59
Smp_099810.1 0 -0.11 -0.66 -4.18 -4.40
Smp_119260.1 0 0.00 -1.60 -4.13 -4.36
Smp_160000.1 0 0.21 0.15 -4.03 -4.29
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_122830.1 0 -0.22 -0.24 -3.98 -3.99
Smp_061590.1 0 -0.29 -0.52 -4.09 -3.95
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_212100.1 0 -0.28 -1.09 -4.30 -3.94
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_068920.3 0 -0.20 -1.33 -4.27 -3.53
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_077860.1 0 1.35 0.90 -2.31 -3.33
Smp_045950.1 0 0.07 -1.04 -4.82 -3.27
Smp_205840.1 0 0.97 0.46 -4.31 -2.31
Smp_020220.2 0 3.03 2.60 0.67 -1.87
Smp_035290.1 0 -2.51 -6.13 -0.77 0.19
Smp_155610.1 0 -3.75 -6.34 0.72 0.81
Smp_026820.1 0 -3.23 -3.72 0.76 1.23
Smp_027360.1 0 -2.41 -5.03 1.31 1.70
Smp_038870.2 0 -10.39 -10.39 1.75 2.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002920.1 SmLINC06489-IBu 0.86 2.79e-05 5.00e-04
Smp_005080.1 SmLINC06489-IBu 0.81 1.00e-04 2.20e-03
Smp_011660.2 SmLINC06489-IBu 0.81 2.00e-04 2.40e-03
Smp_020220.2 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Smp_026820.1 SmLINC06489-IBu -0.85 5.29e-05 8.00e-04
Smp_027360.1 SmLINC06489-IBu -0.80 3.00e-04 3.10e-03
Smp_032580.1 SmLINC06489-IBu 0.81 2.00e-04 2.50e-03
Smp_035290.1 SmLINC06489-IBu -0.82 1.00e-04 1.70e-03
Smp_038870.2 SmLINC06489-IBu -0.81 1.00e-04 2.20e-03
Smp_045950.1 SmLINC06489-IBu 0.86 2.50e-05 5.00e-04
Smp_054750.1 SmLINC06489-IBu 0.85 4.46e-05 7.00e-04
Smp_059210.2 SmLINC06489-IBu 0.80 3.00e-04 3.30e-03
Smp_061590.1 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Smp_068920.3 SmLINC06489-IBu 0.84 6.54e-05 1.00e-03
Smp_071640.1 SmLINC06489-IBu 0.84 6.98e-05 1.00e-03
Smp_077820.1 SmLINC06489-IBu 0.80 2.00e-04 2.80e-03
Smp_077860.1 SmLINC06489-IBu 0.81 2.00e-04 2.60e-03
Smp_078310.2 SmLINC06489-IBu 0.82 1.00e-04 2.10e-03
Smp_078550.1 SmLINC06489-IBu 0.81 2.00e-04 2.60e-03
Smp_079280.1 SmLINC06489-IBu 0.88 1.43e-05 3.00e-04
Smp_090930.5 SmLINC06489-IBu 0.83 1.00e-04 1.50e-03
Smp_099810.1 SmLINC06489-IBu 0.85 4.18e-05 7.00e-04
Smp_109300.1 SmLINC06489-IBu 0.84 7.88e-05 1.10e-03
Smp_111710.1 SmLINC06489-IBu 0.85 5.95e-05 9.00e-04
Smp_119260.1 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Smp_120020.1 SmLINC06489-IBu 0.80 3.00e-04 3.40e-03
Smp_120920.1 SmLINC06489-IBu 0.84 8.03e-05 1.20e-03
Smp_122830.1 SmLINC06489-IBu 0.87 1.66e-05 3.00e-04
Smp_137330.1 SmLINC06489-IBu 0.85 5.74e-05 9.00e-04
Smp_139980.1 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Smp_141020.1 SmLINC06489-IBu 0.86 2.62e-05 5.00e-04
Smp_142260.1 SmLINC06489-IBu 0.81 2.00e-04 2.40e-03
Smp_148570.1 SmLINC06489-IBu 0.81 2.00e-04 2.70e-03
Smp_149220.1 SmLINC06489-IBu 0.81 2.00e-04 2.60e-03
Smp_155610.1 SmLINC06489-IBu -0.82 1.00e-04 1.90e-03
Smp_157750.1 SmLINC06489-IBu 0.86 3.37e-05 6.00e-04
Smp_160000.1 SmLINC06489-IBu 0.83 1.00e-04 1.50e-03
Smp_164270.1 SmLINC06489-IBu 0.82 1.00e-04 2.00e-03
Smp_168800.1 SmLINC06489-IBu 0.80 3.00e-04 3.40e-03
Smp_177900.1 SmLINC06489-IBu 0.82 1.00e-04 1.70e-03
Smp_184180.1 SmLINC06489-IBu 0.82 1.00e-04 1.70e-03
Smp_194110.1 SmLINC06489-IBu 0.82 1.00e-04 1.90e-03
Smp_198650.1 SmLINC06489-IBu 0.82 1.00e-04 2.10e-03
Smp_202340.1 SmLINC06489-IBu 0.85 4.43e-05 7.00e-04
Smp_204940.1 SmLINC06489-IBu 0.81 2.00e-04 2.60e-03
Smp_205060.1 SmLINC06489-IBu 0.85 3.93e-05 7.00e-04
Smp_205840.1 SmLINC06489-IBu 0.85 4.20e-05 7.00e-04
Smp_212100.1 SmLINC06489-IBu 0.86 3.36e-05 6.00e-04
Smp_212510.1 SmLINC06489-IBu 0.89 6.64e-06 1.00e-04