Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06436-IBu Data

Chromosome: SC 0172 - Coordinate: SC 0172:103790-108540 - Strand: +


Fig. 6A for SmLINC06436-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_069220.1 0 1.51 -0.88 -4.10 -5.76
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_205000.1 0 4.78 1.99 -1.34 -3.44
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_106930.1 0 3.72 0.12 -3.92 -3.35
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_206300.1 0 2.22 0.64 -3.00 -2.69
Smp_202560.1 0 4.87 -1.17 -2.65 -2.65
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_201000.1 0 6.84 0.00 2.13 2.38
Smp_139700.1 0 6.89 4.15 2.03 5.39
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005080.1 SmLINC06436-IBu 0.82 1.00e-04 1.80e-03
Smp_021460.1 SmLINC06436-IBu 0.88 1.38e-05 3.00e-04
Smp_032280.1 SmLINC06436-IBu 0.87 1.67e-05 3.00e-04
Smp_033930.1 SmLINC06436-IBu 0.82 1.00e-04 1.90e-03
Smp_035020.1 SmLINC06436-IBu 0.89 8.58e-06 2.00e-04
Smp_038980.2 SmLINC06436-IBu 0.84 8.58e-05 1.20e-03
Smp_048060.1 SmLINC06436-IBu 0.97 2.19e-09 7.85e-07
Smp_049300.3 SmLINC06436-IBu 0.81 2.00e-04 2.40e-03
Smp_069220.1 SmLINC06436-IBu 0.80 3.00e-04 3.30e-03
Smp_079280.1 SmLINC06436-IBu 0.82 1.00e-04 1.70e-03
Smp_084210.1 SmLINC06436-IBu 0.88 1.20e-05 3.00e-04
Smp_093740.2 SmLINC06436-IBu 0.80 3.00e-04 3.20e-03
Smp_103140.1 SmLINC06436-IBu 0.95 4.71e-08 6.12e-06
Smp_106930.1 SmLINC06436-IBu 0.85 4.46e-05 7.00e-04
Smp_123250.1 SmLINC06436-IBu 0.91 1.77e-06 7.72e-05
Smp_133830.1 SmLINC06436-IBu 0.87 1.98e-05 4.00e-04
Smp_138890.1 SmLINC06436-IBu 0.84 8.15e-05 1.20e-03
Smp_139700.1 SmLINC06436-IBu 0.84 7.46e-05 1.10e-03
Smp_140390.1 SmLINC06436-IBu 0.83 1.00e-04 1.40e-03
Smp_142120.1 SmLINC06436-IBu 0.92 1.03e-06 5.26e-05
Smp_142460.1 SmLINC06436-IBu 0.90 3.78e-06 1.00e-04
Smp_143450.1 SmLINC06436-IBu 0.95 2.72e-08 4.21e-06
Smp_145100.1 SmLINC06436-IBu 0.90 3.19e-06 1.00e-04
Smp_148840.1 SmLINC06436-IBu 0.89 5.01e-06 1.00e-04
Smp_152770.1 SmLINC06436-IBu 0.91 1.98e-06 8.36e-05
Smp_159350.1 SmLINC06436-IBu 0.83 1.00e-04 1.50e-03
Smp_161230.1 SmLINC06436-IBu 0.81 2.00e-04 2.60e-03
Smp_164170.1 SmLINC06436-IBu 0.85 4.96e-05 8.00e-04
Smp_164180.1 SmLINC06436-IBu 0.95 2.10e-08 3.53e-06
Smp_164270.1 SmLINC06436-IBu 0.85 4.53e-05 7.00e-04
Smp_171540.2 SmLINC06436-IBu 0.91 1.24e-06 5.99e-05
Smp_172460.1 SmLINC06436-IBu 0.88 1.12e-05 2.00e-04
Smp_176230.2 SmLINC06436-IBu 0.84 6.64e-05 1.00e-03
Smp_179390.1 SmLINC06436-IBu 0.89 7.88e-06 2.00e-04
Smp_179670.1 SmLINC06436-IBu 0.95 3.95e-08 5.43e-06
Smp_187410.1 SmLINC06436-IBu 0.86 3.06e-05 5.00e-04
Smp_193650.1 SmLINC06436-IBu 0.83 1.00e-04 1.40e-03
Smp_193700.1 SmLINC06436-IBu 0.89 6.08e-06 1.00e-04
Smp_193990.1 SmLINC06436-IBu 0.85 5.47e-05 9.00e-04
Smp_195090.1 SmLINC06436-IBu 0.82 1.00e-04 1.80e-03
Smp_196680.1 SmLINC06436-IBu 0.89 6.90e-06 2.00e-04
Smp_200480.1 SmLINC06436-IBu 0.80 3.00e-04 3.30e-03
Smp_200600.1 SmLINC06436-IBu 0.90 3.62e-06 1.00e-04
Smp_201000.1 SmLINC06436-IBu 0.82 1.00e-04 1.80e-03
Smp_201230.1 SmLINC06436-IBu 0.91 1.67e-06 7.40e-05
Smp_202030.1 SmLINC06436-IBu 0.91 1.71e-06 7.53e-05
Smp_202230.1 SmLINC06436-IBu 0.98 7.99e-12 2.17e-08
Smp_202560.1 SmLINC06436-IBu 0.89 8.32e-06 2.00e-04
Smp_202720.1 SmLINC06436-IBu 0.91 1.50e-06 6.84e-05
Smp_202780.1 SmLINC06436-IBu 0.89 8.34e-06 2.00e-04
Smp_202990.1 SmLINC06436-IBu 0.95 3.12e-08 4.62e-06
Smp_203550.1 SmLINC06436-IBu 0.98 6.74e-11 8.30e-08
Smp_203820.1 SmLINC06436-IBu 0.88 1.22e-05 3.00e-04
Smp_204820.1 SmLINC06436-IBu 0.80 2.00e-04 2.80e-03
Smp_204830.1 SmLINC06436-IBu 0.84 8.43e-05 1.20e-03
Smp_205000.1 SmLINC06436-IBu 0.81 1.00e-04 2.20e-03
Smp_205030.1 SmLINC06436-IBu 0.81 1.00e-04 2.20e-03
Smp_205220.1 SmLINC06436-IBu 0.92 1.02e-06 5.21e-05
Smp_206300.1 SmLINC06436-IBu 0.84 6.66e-05 1.00e-03
Smp_212350.1 SmLINC06436-IBu 0.80 3.00e-04 3.20e-03