Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06424-IBu Data

Chromosome: SC 0170 - Coordinate: SC 0170:478405-483569 - Strand: +


Fig. S5 for SmLINC06424-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC06424-IBu 0 0.67 -0.98 -3.65 -4.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC06424-IBu 0.91 1.78e-06 8.01e-05
Smp_035200.3 SmLINC06424-IBu 0.90 2.87e-06 1.00e-04
Smp_036270.4 SmLINC06424-IBu 0.92 8.84e-07 4.89e-05
Smp_111640.1 SmLINC06424-IBu 0.96 1.41e-08 2.87e-06
Smp_112090.1 SmLINC06424-IBu 0.91 1.47e-06 7.01e-05
Smp_125070.1 SmLINC06424-IBu 0.90 2.56e-06 1.00e-04
Smp_184710.1 SmLINC06424-IBu 0.98 5.07e-11 7.59e-08
Smp_185170.1 SmLINC06424-IBu 0.93 4.44e-07 3.02e-05
Smp_185680.1 SmLINC06424-IBu 0.92 7.24e-07 4.25e-05
Smp_185830.1 SmLINC06424-IBu 0.96 8.35e-09 2.02e-06
Smp_204360.1 SmLINC06424-IBu 0.97 1.35e-09 6.19e-07
Smp_205450.1 SmLINC06424-IBu 0.95 1.48e-08 2.97e-06