Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06405-IBu Data

Chromosome: SC 0170 - Coordinate: SC 0170:500381-504070 - Strand: -


Fig. S5 for SmLINC06405-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
Smp_157140.1 0 9.07 10.07 10.84 11.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 SmLINC06405-IBu 0.94 1.52e-07 1.44e-05
Smp_036270.4 SmLINC06405-IBu 0.92 1.05e-06 5.55e-05
Smp_051230.4 SmLINC06405-IBu 0.92 8.50e-07 4.76e-05
Smp_134410.1 SmLINC06405-IBu 0.91 2.44e-06 1.00e-04
Smp_149670.1 SmLINC06405-IBu 0.93 2.78e-07 2.18e-05
Smp_157140.1 SmLINC06405-IBu -0.91 2.32e-06 9.68e-05
Smp_168080.2 SmLINC06405-IBu 0.91 2.07e-06 8.92e-05
Smp_188900.1 SmLINC06405-IBu 0.91 2.35e-06 9.75e-05
Smp_195070.1 SmLINC06405-IBu 0.92 5.92e-07 3.69e-05