Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06389-IBu Data

Chromosome: SC 0169 - Coordinate: SC 0169:299679-317119 - Strand: +


Fig. S5 for SmLINC06389-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC06389-IBu 0 0.00 3.37 6.93 7.84
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_024180.1 0 3.08 4.23 10.66 11.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.1 SmLINC06389-IBu 0.92 7.11e-07 4.20e-05
Smp_024180.2 SmLINC06389-IBu 0.93 3.43e-07 2.53e-05
Smp_038870.2 SmLINC06389-IBu 0.90 2.94e-06 1.00e-04