Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06367-IBu Data

Chromosome: SC 0167 - Coordinate: SC 0167:285471-292729 - Strand: -


Fig. S5 for SmLINC06367-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
SmLINC06367-IBu 0 -0.17 -2.22 -3.46 -5.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC06367-IBu 0.95 2.32e-08 4.02e-06
Smp_035200.3 SmLINC06367-IBu 0.92 7.16e-07 4.22e-05
Smp_036270.4 SmLINC06367-IBu 0.96 2.90e-09 1.01e-06
Smp_077690.1 SmLINC06367-IBu 0.91 1.92e-06 8.48e-05
Smp_111640.1 SmLINC06367-IBu 0.94 1.68e-07 1.54e-05
Smp_112090.1 SmLINC06367-IBu 0.92 7.69e-07 4.44e-05
Smp_125070.1 SmLINC06367-IBu 0.91 1.41e-06 6.80e-05
Smp_160230.1 SmLINC06367-IBu 0.90 2.80e-06 1.00e-04
Smp_182090.1 SmLINC06367-IBu 0.92 5.83e-07 3.66e-05
Smp_184710.1 SmLINC06367-IBu 0.92 1.13e-06 5.84e-05
Smp_184760.1 SmLINC06367-IBu 0.91 1.44e-06 6.92e-05
Smp_204360.1 SmLINC06367-IBu 0.91 1.73e-06 7.86e-05