Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06289-IBu Data

Chromosome: SC 0151 - Coordinate: SC 0151:330086-330400 - Strand: +


Fig. S5 for SmLINC06289-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06289-IBu 0 1.06 -1.93 2.79 4.60
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 SmLINC06289-IBu 0.93 2.58e-07 2.08e-05
Smp_028870.1 SmLINC06289-IBu 0.92 9.35e-07 5.09e-05
Smp_037720.1 SmLINC06289-IBu 0.96 7.25e-09 1.84e-06
Smp_041540.1 SmLINC06289-IBu 0.91 2.25e-06 9.45e-05
Smp_070540.1 SmLINC06289-IBu 0.90 3.04e-06 1.00e-04
Smp_085180.1 SmLINC06289-IBu 0.90 4.03e-06 1.00e-04
Smp_086450.3 SmLINC06289-IBu 0.90 3.36e-06 1.00e-04
Smp_102780.1 SmLINC06289-IBu 0.92 5.81e-07 3.65e-05
Smp_105450.2 SmLINC06289-IBu 0.91 2.44e-06 1.00e-04
Smp_123880.1 SmLINC06289-IBu 0.90 2.65e-06 1.00e-04
Smp_130100.1 SmLINC06289-IBu 0.94 1.74e-07 1.58e-05
Smp_131410.1 SmLINC06289-IBu 0.92 1.15e-06 5.89e-05
Smp_136730.1 SmLINC06289-IBu 0.90 2.82e-06 1.00e-04
Smp_137810.1 SmLINC06289-IBu 0.93 4.58e-07 3.09e-05
Smp_139240.1 SmLINC06289-IBu 0.91 1.72e-06 7.83e-05
Smp_140720.1 SmLINC06289-IBu 0.96 1.30e-08 2.72e-06
Smp_155570.1 SmLINC06289-IBu 0.93 3.06e-07 2.34e-05
Smp_159650.1 SmLINC06289-IBu 0.90 3.00e-06 1.00e-04
Smp_162320.1 SmLINC06289-IBu 0.91 1.72e-06 7.83e-05
Smp_164320.1 SmLINC06289-IBu 0.91 1.85e-06 8.23e-05
Smp_181070.1 SmLINC06289-IBu 0.92 6.80e-07 4.07e-05
Smp_187140.1 SmLINC06289-IBu 0.92 1.13e-06 5.84e-05
Smp_194380.1 SmLINC06289-IBu 0.90 2.64e-06 1.00e-04
Smp_194910.1 SmLINC06289-IBu 0.92 1.08e-06 5.66e-05
Smp_196830.1 SmLINC06289-IBu 0.92 5.18e-07 3.36e-05
Smp_202610.1 SmLINC06289-IBu 0.92 8.18e-07 4.63e-05
Smp_203030.1 SmLINC06289-IBu 0.94 8.08e-08 9.36e-06
Smp_205580.1 SmLINC06289-IBu 0.90 3.80e-06 1.00e-04