Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06287-IBu Data

Chromosome: SC 0151 - Coordinate: SC 0151:159044-160185 - Strand: -


Fig. S5 for SmLINC06287-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_205470.1 0 0.16 -0.98 -10.60 -7.47
SmLINC06287-IBu 0 0.35 0.50 -4.73 -4.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_098890.1 SmLINC06287-IBu 0.92 9.75e-07 5.24e-05
Smp_168800.1 SmLINC06287-IBu 0.90 2.99e-06 1.00e-04
Smp_200120.1 SmLINC06287-IBu 0.91 1.20e-06 6.09e-05
Smp_205470.1 SmLINC06287-IBu 0.91 1.33e-06 6.53e-05