Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06259-IBu Data

Chromosome: SC 0149 - Coordinate: SC 0149:219344-226826 - Strand: -


Fig. S5 for SmLINC06259-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06259-IBu 0 -3.03 2.70 4.65 5.86
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_050350.3 SmLINC06259-IBu 0.91 1.61e-06 7.49e-05
Smp_052280.2 SmLINC06259-IBu 0.92 1.11e-06 5.76e-05
Smp_056460.1 SmLINC06259-IBu 0.90 3.16e-06 1.00e-04
Smp_095410.1 SmLINC06259-IBu 0.92 1.19e-06 6.06e-05
Smp_140720.1 SmLINC06259-IBu 0.91 1.51e-06 7.13e-05
Smp_192780.1 SmLINC06259-IBu 0.93 2.85e-07 2.22e-05