Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06258-IBu Data

Chromosome: SC 0149 - Coordinate: SC 0149:219344-226800 - Strand: -


Fig. S5 for SmLINC06258-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06258-IBu 0 3.88 5.84 6.75 9.02
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC06258-IBu 0.91 1.60e-06 7.44e-05
Smp_085180.1 SmLINC06258-IBu 0.90 4.18e-06 1.00e-04
Smp_123880.1 SmLINC06258-IBu 0.91 2.51e-06 1.00e-04
Smp_131410.1 SmLINC06258-IBu 0.91 2.11e-06 9.03e-05
Smp_136730.1 SmLINC06258-IBu 0.90 2.82e-06 1.00e-04
Smp_139160.1 SmLINC06258-IBu 0.91 2.18e-06 9.26e-05
Smp_139240.1 SmLINC06258-IBu 0.91 2.02e-06 8.77e-05
Smp_162320.1 SmLINC06258-IBu 0.90 3.45e-06 1.00e-04
Smp_163700.1 SmLINC06258-IBu 0.90 3.79e-06 1.00e-04
Smp_164320.1 SmLINC06258-IBu 0.91 1.50e-06 7.11e-05
Smp_187140.1 SmLINC06258-IBu 0.91 2.24e-06 9.43e-05
Smp_194380.1 SmLINC06258-IBu 0.91 2.11e-06 9.03e-05
Smp_194910.1 SmLINC06258-IBu 0.90 3.75e-06 1.00e-04
Smp_205580.1 SmLINC06258-IBu 0.90 3.56e-06 1.00e-04