Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06245-IBu Data

Chromosome: SC 0147 - Coordinate: SC 0147:504085-508630 - Strand: +


Fig. S5 for SmLINC06245-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06245-IBu 0 -0.57 1.07 2.91 4.66
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC06245-IBu 0.92 1.16e-06 5.94e-05
Smp_037720.1 SmLINC06245-IBu 0.92 7.49e-07 4.35e-05
Smp_083430.1 SmLINC06245-IBu 0.91 2.35e-06 9.75e-05
Smp_086450.3 SmLINC06245-IBu 0.90 3.80e-06 1.00e-04
Smp_123880.1 SmLINC06245-IBu 0.90 3.39e-06 1.00e-04
Smp_131410.1 SmLINC06245-IBu 0.90 3.66e-06 1.00e-04
Smp_139240.1 SmLINC06245-IBu 0.90 3.52e-06 1.00e-04
Smp_140720.1 SmLINC06245-IBu 0.90 3.26e-06 1.00e-04
Smp_163700.1 SmLINC06245-IBu 0.91 2.09e-06 8.99e-05
Smp_187140.1 SmLINC06245-IBu 0.90 4.26e-06 1.00e-04
Smp_194380.1 SmLINC06245-IBu 0.91 1.96e-06 8.60e-05
Smp_196830.1 SmLINC06245-IBu 0.93 5.00e-07 3.28e-05