Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06241-IBu Data

Chromosome: SC 0144 - Coordinate: SC 0144:809109-811976 - Strand: +


Fig. S5 for SmLINC06241-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
SmLINC06241-IBu 0 2.77 5.19 0.64 -7.79
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC06241-IBu 0.93 3.26e-07 2.44e-05
Smp_032120.1 SmLINC06241-IBu 0.96 3.35e-09 1.11e-06
Smp_034840.1 SmLINC06241-IBu 0.93 2.30e-07 1.92e-05
Smp_036270.3 SmLINC06241-IBu 0.94 8.85e-08 9.95e-06
Smp_062070.1 SmLINC06241-IBu 0.93 4.74e-07 3.16e-05
Smp_063650.3 SmLINC06241-IBu 0.97 2.38e-10 2.03e-07
Smp_084940.2 SmLINC06241-IBu 0.92 9.25e-07 5.05e-05
Smp_098370.1 SmLINC06241-IBu 0.91 1.58e-06 7.36e-05
Smp_103540.1 SmLINC06241-IBu 0.92 7.64e-07 4.41e-05
Smp_159070.3 SmLINC06241-IBu 0.94 1.20e-07 1.22e-05
Smp_159150.1 SmLINC06241-IBu 0.93 3.15e-07 2.38e-05
Smp_200120.1 SmLINC06241-IBu 0.90 2.53e-06 1.00e-04