Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06240-IBu Data

Chromosome: SC 0144 - Coordinate: SC 0144:794646-811976 - Strand: +


Fig. S5 for SmLINC06240-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
Smp_176430.2 0 9.09 10.43 10.57 10.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 SmLINC06240-IBu 0.90 3.86e-06 1.00e-04
Smp_034940.3 SmLINC06240-IBu 0.97 1.83e-09 7.50e-07
Smp_035090.2 SmLINC06240-IBu 0.91 1.55e-06 7.27e-05
Smp_051230.4 SmLINC06240-IBu 0.94 6.67e-08 8.21e-06
Smp_109240.1 SmLINC06240-IBu 0.93 2.59e-07 2.08e-05
Smp_134410.1 SmLINC06240-IBu 0.93 2.20e-07 1.86e-05
Smp_149670.1 SmLINC06240-IBu 0.91 2.32e-06 9.65e-05
Smp_168080.2 SmLINC06240-IBu 0.96 8.44e-09 2.04e-06
Smp_176430.2 SmLINC06240-IBu -0.90 2.60e-06 1.00e-04
Smp_188900.1 SmLINC06240-IBu 0.92 7.25e-07 4.25e-05
Smp_195070.1 SmLINC06240-IBu 0.96 4.05e-09 1.26e-06