Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06237-IBu Data

Chromosome: SC 0144 - Coordinate: SC 0144:632092-633595 - Strand: -


Fig. S5 for SmLINC06237-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06237-IBu 0 2.83 1.21 7.74 8.05
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031770.10 SmLINC06237-IBu 0.92 9.23e-07 5.04e-05
Smp_058660.1 SmLINC06237-IBu 0.95 2.34e-08 4.03e-06
Smp_095410.1 SmLINC06237-IBu 0.91 2.13e-06 9.11e-05
Smp_137320.1 SmLINC06237-IBu 0.93 4.22e-07 2.92e-05
Smp_145400.1 SmLINC06237-IBu 0.92 8.81e-07 4.88e-05
Smp_151120.1 SmLINC06237-IBu 0.90 2.71e-06 1.00e-04
Smp_172960.1 SmLINC06237-IBu 0.93 4.51e-07 3.06e-05
Smp_192780.1 SmLINC06237-IBu 0.90 4.31e-06 1.00e-04
Smp_194860.1 SmLINC06237-IBu 0.90 3.32e-06 1.00e-04