Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06212-IBu Data

Chromosome: SC 0138 - Coordinate: SC 0138:264978-265617 - Strand: -


Fig. S5 for SmLINC06212-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
SmLINC06212-IBu 0 -0.75 -3.47 -10.55 -10.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 SmLINC06212-IBu 0.91 1.31e-06 6.47e-05
Smp_083340.4 SmLINC06212-IBu 0.91 1.46e-06 6.96e-05
Smp_097800.1 SmLINC06212-IBu 0.92 6.25e-07 3.84e-05
Smp_184760.1 SmLINC06212-IBu 0.91 2.09e-06 8.97e-05