Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06183-IBu Data

Chromosome: SC 0137 - Coordinate: SC 0137:7918-37061 - Strand: +


Fig. S5 for SmLINC06183-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
SmLINC06183-IBu 0 1.58 3.42 -7.62 -7.62
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC06183-IBu 0.96 6.95e-09 1.79e-06
Smp_032120.1 SmLINC06183-IBu 0.91 1.48e-06 7.05e-05
Smp_090930.5 SmLINC06183-IBu 0.91 1.83e-06 8.19e-05
Smp_098890.1 SmLINC06183-IBu 0.94 1.82e-07 1.63e-05
Smp_138080.1 SmLINC06183-IBu 0.96 1.30e-08 2.72e-06
Smp_159070.3 SmLINC06183-IBu 0.94 8.61e-08 9.77e-06
Smp_194060.1 SmLINC06183-IBu 0.96 1.05e-08 2.36e-06
Smp_200120.1 SmLINC06183-IBu 0.91 2.05e-06 8.86e-05